Mapping the global distribution and spread of the Plasmodium vivax-associated virus MaRNAV-1 [0.03%]
绘制疟原虫关联病毒MaRNAV-1的全球分布和传播图谱
Mary E Petrone,Justine Charon,Rhys H Parry et al.
Mary E Petrone et al.
Matryoshka RNA virus 1 (MaRNAV-1) is a bi-segmented and single-stranded RNA virus associated with Plasmodium vivax, a cause of human malaria. Little has been uncovered about the epidemiology and ecology of this virus since its discovery in ...
Extreme GC3 codon bias in a novel brown seaweed virus results in pseudoambigrammatic characteristics [0.03%]
一种新型褐藻病毒的极端GC3密码子偏爱性导致伪回文特性
Rob J Dekker,Wim C de Leeuw,Han Rauwerda et al.
Rob J Dekker et al.
Although viruses are often studied in relation to disease, they can also offer valuable insights into RNA functionality. Due to their vast range of hosts and high mutation rates, viruses can quickly adapt to changing environments. It is the...
Sylvain Gandon,Tapan Goel,Joshua S Weitz et al.
Sylvain Gandon et al.
When the temperate phage [Formula: see text] infects its host, the bacterium Escherichia coli, it can either replicate to form new progeny (lytic growth) or integrate its genome into the host chromosome (lysogenization). Crucially, the prob...
Unravelling viral identity: avoiding the trap of endogenous sequences for viral surveillance of small ruminant oncogenic retroviruses [0.03%]
揭秘病毒身份：避免将宿主内源序列误判为小反刍动物致瘤逆转录病毒监控序列陷阱
Benjamin Riocreux-Verney,Marie Verneret,Christine Dolmazon et al.
Benjamin Riocreux-Verney et al.
Small ruminants (sheep and goats) are one of the few mammals in which an exogenous retrovirus (XRV) and closely related endogenous retroviral (ERV) elements coexist within the same host genome. The betaretroviruses Jaagsiekte sheep retrovir...
Metaviromics reveals a high diversity of viruses belonging to the Caliciviridae family in seal feces [0.03%]
宏病毒组揭示了Caliciviridae病毒家族在海豹粪便中具有高度多样性
Marion Desdouits,Julien Schaeffer,Cécile Le Mennec et al.
Marion Desdouits et al.
Investigating potential zoonotic viruses in animal reservoirs is crucial to anticipate viral emergence. Seals can represent large populations of coastal mammals with unknown consequences on the microbiological quality of their surrounding e...
Linkage-aware inference of fitness from short-read time-series genomic data [0.03%]
基于连锁的短读长基因组时间序列数据适应性推断方法
Syed M U Abdullah,Muhammad Saqib Sohail,Raymond H Y Louie et al.
Syed M U Abdullah et al.
Inferring the fitness effect of mutations is a basic problem in understanding the evolution of populations over time. When multiple mutations are present in a population simultaneously, genetic linkage comes into play, and the fate of an in...
Comprehensive hallmark gene sequence, genomic and structural analysis clarifies new and established taxa within the Picornavirales [0.03%]
全面的标志性基因序列、基因组和结构分析阐明了Picornavirales目中已知和新发现的分类群
Richard Mayne,Donald B Smith,Katherine Brown et al.
Richard Mayne et al.
The order Picornavirales is a group of highly diverse RNA viruses that includes many pathogens of significance to human and veterinary health, agriculture, and the wider environment. However, the wide range of viruses assigned to the order,...
Bradley R Jones,Zabrina L Brumme,Eric Hunter et al.
Bradley R Jones et al.
Determining the sequence of the transmitted founder virus, the virus that establishes infection in a new host, is critical for understanding early viral dynamics and evolution. Methods to estimate transmitted founder virus sequences using a...
Josep Gregori,Sergi Colomer-Castell,Carolina Campos et al.
Josep Gregori et al.
Previous studies based on clinical data from hepatitis C virus and hepatitis E virus infections revealed a deterministic evolution of quasispecies structure, irrespective of haplotype identities, towards a flat-like landscape, characterized...
Single capsid mutations modulating phage adsorption, persistence, and plaque morphology shape evolutionary trajectories in ΦX174 [0.03%]
单个衣壳突变通过调节噬菌体吸附、持久性和蚀斑形态塑造ΦX174的进化轨迹
Manuela Reuter,Michael Sieber,Octavio Reyes-Matte et al.
Manuela Reuter et al.
The evolutionary success of lytic bacteriophages depends on key life-history traits, including adsorption, lysis time, burst size, and persistence in the environment. However, how these traits evolve to allow adaptation to different environ...