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Cell chemical biology. 2019 May 16;26(5):737-744.e4. doi: 10.1016/j.chembiol.2019.02.010 Q17.22025

Investigation of Penicillin Binding Protein (PBP)-like Peptide Cyclase and Hydrolase in Surugamide Non-ribosomal Peptide Biosynthesis

丝状霉素非核糖体肽生物合成中的青霉酰多肽酶和肽环化酶及水解酶的初步研究 翻译改进

Yongjun Zhou  1, Xiao Lin  2, Chunmin Xu  3, Yaoyao Shen  1, Shu-Ping Wang  1, Hongze Liao  1, Lei Li  1, Hai Deng  4, Hou-Wen Lin  5

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作者单位

  • 1 Research Center for Marine Drugs, State Key Laboratory of Oncogenes and Related Genes, Department of Pharmacy, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China.
  • 2 College of Pharmacy, Jinan University, Guangzhou 510632, China.
  • 3 Jiangxi University of Traditional Chinese Medicine, Nanchang 33004, China.
  • 4 Research Center for Marine Drugs, State Key Laboratory of Oncogenes and Related Genes, Department of Pharmacy, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China; Department of Chemistry, University of Aberdeen, Aberdeen AB24 3UE, UK. Electronic address: h.deng@abdn.ac.uk.
  • 5 Research Center for Marine Drugs, State Key Laboratory of Oncogenes and Related Genes, Department of Pharmacy, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China. Electronic address: franklin67@126.com.
  • DOI: 10.1016/j.chembiol.2019.02.010 PMID: 30905680

    摘要 中英对照阅读

    Non-ribosomal peptides (NRPs) are biosynthesized on non-ribosomal peptides synthetase (NRPS) complexes, of which a C-terminal releasing domain commonly offloads the products. Interestingly, a dedicated releasing domain is absent in surugamides (SGM) NRPS, which directs the biosynthesis of cyclic octapeptides, SGM-A to -E, and the linear decapeptide, SGM-F. Here, we confirmed that surE is essential for the production of SGMs via genetic experiments. Biochemical characterization demonstrated that the recombinant enzyme, SurE, can generate the main products SGM-A and -F from the corresponding SNAC substrates, indicating that SurE is a standalone thioesterase-like enzyme. SurE also displays considerable substrate plasticity with expanded ring or different amino acid compositions to produce different cyclopeptides, highlighting the potential of chemoenzymatic applications. Site-directed mutagenesis allowed identification of the key residues of SurE. Finally, bioinformatics analysis suggested that SurE homologs are widely distributed in bacteria, suggesting a general mechanism of NRP release in Nature.

    Keywords: cyclase and hydrolase; non-ribosomal peptide biosynthesis; penicillin binding protein; surugamides.

    Keywords:penicillin binding protein; peptide cyclase

    非核糖体肽(NRPs)在非核糖体肽合成酶(NRPS)复合物上生物合成,其中C端释放结构域通常卸载产物。有趣的是,surugamides(SGM)NRPS中不存在专门的释放结构域,该结构域指导环状八肽SGM-A至-E以及线性十肽SGM-F的生物合成。在此,我们通过遗传实验确认了surE对于SGMs生产的必要性。生化特征表明,重组酶SurE可以从相应的SNAC底物生成主要产物SGM-A和-F,这表明SurE是一种独立的硫酯酶样酶。SurE还显示出相当的底物可塑性,可以扩展环或不同的氨基酸组成来产生不同的环肽,突显了其在化学酶应用中的潜力。定点突变使我们能够识别SurE的关键残基。最后,生物信息学分析表明,SurE同源物在细菌中广泛分布,这表明自然界中NRP释放的一种普遍机制。

    关键词:青霉素结合蛋白; 肽环化酶; 非核糖体肽生物合成

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    期刊名:Cell chemical biology

    缩写:CELL CHEM BIOL

    ISSN:2451-9456

    e-ISSN:2451-9448

    IF/分区:7.2/Q1

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    Investigation of Penicillin Binding Protein (PBP)-like Peptide Cyclase and Hydrolase in Surugamide Non-ribosomal Peptide Biosynthesis