Toward understanding the genetic bases underlying plant-mediated "cry for help" to the microbiota [0.03%]
探究植物介导的“求助信号”作用于微生物群的遗传机制
Zhenghong Wang,Yi Song
Zhenghong Wang
Canonical plant stress biology research has focused mainly on the dynamic regulation of internal genetic pathways in stress responses. Increasingly more studies suggest that plant-mediated timely reshaping of the microbiota could also confe...
Review
iMeta. 2022 Mar 14;1(1):e8. DOI:10.1002/imt2.8 2022
PyComplexHeatmap: a Python package to visualize multimodal genomics data [0.03%]
PyComplexHeatmap：一个用于可视化多模式基因组数据的Python包
Wubin Ding,David Goldberg,Wanding Zhou
Wubin Ding
Python has emerged as a robust programming language increasingly employed in genomics data analysis, largely due to its comprehensive deep learning libraries and proficiency in handling large-scale data, such as single-cell multi-omics data...
ViWrap: A modular pipeline to identify, bin, classify, and predict viral-host relationships for viruses from metagenomes [0.03%]
ViWrap：用于鉴定、分类和预测宏基因组中病毒的宿主关系的模块化流程
Zhichao Zhou,Cody Martin,James C Kosmopoulos et al.
Zhichao Zhou et al.
Viruses are increasingly being recognized as important components of human and environmental microbiomes. However, viruses in microbiomes remain difficult to study because of the difficulty in culturing them and the lack of sufficient model...
TCM2COVID: A resource of anti-COVID-19 traditional Chinese medicine with effects and mechanisms [0.03%]
TCM2COVID：一个针对抗新冠中医药资源及其作用和机制的数据库
Liping Ren,Yi Xu,Lin Ning et al.
Liping Ren et al.
In China, traditional Chinese medicine (TCM) has been widely used for coronavirus infectious disease 2019 (COVID-19) prevention, treatment, and recovery and has played a part in the battle against the disease. A variety of TCM treatments ha...
Yina Huang,Jinxin Liu,Hein Min Tun et al.
Yina Huang et al.
Keywords: diet; gut enterotype; high plateau; human gut microbiome.
Predicting microbiome compositions from species assemblages through deep learning [0.03%]
通过深度学习预测来自物种组的微生物组组成
Sebastian Michel-Mata,Xu-Wen Wang,Yang-Yu Liu et al.
Sebastian Michel-Mata et al.
Microbes can form complex communities that perform critical functions in maintaining the integrity of their environment or their hosts' well-being. Rationally managing these microbial communities requires improving our ability to predict ho...