Xin Meng,Jun Zheng,Fengqiao Wang et al.
Xin Meng et al.
Precision modulation of gut microbiota requires elucidation of the relation between dietary fiber intake and gut microbe dynamics. However, current studies on this aspect are few due to many technical limitations. Here, we used Caenorhabdit...
DeepKla: An attention mechanism-based deep neural network for protein lysine lactylation site prediction [0.03%]
一种基于注意力机制的深度神经网络方法预测蛋白质赖氨酸乳酸化位点
Hao Lv,Fu-Ying Dao,Hao Lin
Hao Lv
As a newly discovered protein posttranslational modification, lysine lactylation (Kla) plays a pivotal role in various cellular processes. High throughput mass spectrometry is the primary approach for the detection of Kla sites. However, ex...
Keith Dufault-Thompson,Xiaofang Jiang
Keith Dufault-Thompson
High-throughput sequencing has become an increasingly central component of microbiome research. The development of de Bruijn graph-based methods for assembling high-throughput sequencing data has been an important part of the broader adopti...
Review
iMeta. 2022 Mar 1;1(1):e4. DOI:10.1002/imt2.4 2022
ImageGP: An easy-to-use data visualization web server for scientific researchers [0.03%]
ImageGP：一个简单易用的科研数据可视化网络服务器
Tong Chen,Yong-Xin Liu,Luqi Huang
Tong Chen
Data visualization plays a crucial role in illustrating results and sharing knowledge among researchers. Though many types of visualization tools are widely used, most of them require enough coding experience or are designed for specialized...
Linking soil fungi to bacterial community assembly in arid ecosystems [0.03%]
干旱生态系统中土壤真菌与细菌群落组装之间的联系
Shuo Jiao,Haiyan Chu,Baogang Zhang et al.
Shuo Jiao et al.
Revealing the roles of biotic factors in driving community assembly, which is crucial for the understanding of biodiversity and ecosystem functions, is a fundamental but infrequently investigated subject in microbial ecology. Here, combinin...
Yong-Xin Liu,Tong Chen,Danyi Li et al.
Yong-Xin Liu et al.
The cover of iMeta's inaugural issue. The galaxy represents the complexity and value of bioinformatics and metagenomics. DNA, which represents genetic components that guide biological diversity, is at the center of the galaxy. The spiral ar...
Editorial
iMeta. 2022 Mar 28;1(1):e15. DOI:10.1002/imt2.15 2022
Parallel-Meta Suite: Interactive and rapid microbiome data analysis on multiple platforms [0.03%]
Parallel-Meta套件：多平台微生物组数据分析的互动性和快速性
Yuzhu Chen,Jian Li,Yufeng Zhang et al.
Yuzhu Chen et al.
Massive microbiome sequencing data has been generated, which elucidates associations between microbes and their environmental phenotypes such as host health or ecosystem status. Outstanding bioinformatic tools are the basis to decipher the ...
MetOrigin: Discriminating the origins of microbial metabolites for integrative analysis of the gut microbiome and metabolome [0.03%]
MetOrigin：鉴别微生物代谢物的起源以整合分析肠道微生物组和代谢组
Gang Yu,Cuifang Xu,Danni Zhang et al.
Gang Yu et al.
The interactions between the gut microbiome and metabolome play an important role in human health and diseases. Current studies mainly apply statistical correlation analysis between the gut microbiome and all the identified metabolites to e...
How much metagenome data is needed for protein structure prediction: The advantages of targeted approach from the ecological and evolutionary perspectives [0.03%]
从生态和进化角度出发，基于目标的宏基因组数据预测蛋白质结构的优势及所需的数据量
Pengshuo Yang,Kang Ning
Pengshuo Yang
It has been proven that three-dimensional protein structures could be modeled by supplementing homologous sequences with metagenome sequences. Even though a large volume of metagenome data is utilized for such purposes, a significant propor...
Review
iMeta. 2022 Mar 6;1(1):e9. DOI:10.1002/imt2.9 2022
Dietary licorice enhances in vivo cadmium detoxification and modulates gut microbial metabolism in mice [0.03%]
膳食甘草促进小鼠体内镉解毒并调节肠道微生物代谢
Xin Zheng,Likun Wang,Linhao You et al.
Xin Zheng et al.
Mass cadmium (Cd) poisoning is a serious health problem in many parts of the world. We propose that dietary intervention can be a practical solution to this problem. This study aimed to identify effective dietary products from traditional C...