EasyAmplicon: An easy-to-use, open-source, reproducible, and community-based pipeline for amplicon data analysis in microbiome research [0.03%]
EasyAmplicon：一个易用的、开源的、可重复的和社区驱动的扩增子数据分析流程在微生物组研究中的应用
Yong-Xin Liu,Lei Chen,Tengfei Ma et al.
Yong-Xin Liu et al.
It is difficult for beginners to learn and use amplicon analysis software because there are so many software tools to choose from, and all of them need multiple steps of operation. Herein, we provide a cross-platform, open-source, and commu...
Chi Liu,Chaonan Li,Yanqiong Jiang et al.
Chi Liu et al.
The article provides a pipeline for comparing microbial co-occurrence networks based on the R microeco package and meconetcomp package. It has high flexibility and expansibility and can help users efficiently compare networks built from dif...
Yong-Xin Liu,Chun-Lin Shi,Tengfei Ma et al.
Yong-Xin Liu et al.
Milestones of the first year of iMeta. iMeta is an open-access Wiley partner journal launched by iMeta Science Society consisting of worldwide scientists in bioinformatics and metagenomics. In 2022, iMeta released four issues, including 60 ...
Editorial
iMeta. 2023 Feb 13;2(1):e89. DOI:10.1002/imt2.89 2023
Decoding the role of immune T cells: A new territory for improvement of metabolic-associated fatty liver disease [0.03%]
揭秘免疫T细胞的作用：代谢相关脂肪性肝病治疗的新领域
Jia Liu,Mingning Ding,Jinzhao Bai et al.
Jia Liu et al.
Metabolic-associated fatty liver disease (MAFLD) is a new emerging concept and is associated with metabolic dysfunction, generally replacing the name of nonalcoholic fatty liver disease (NAFLD) due to heterogeneous liver condition and inacc...
Review
iMeta. 2023 Jan 18;2(1):e76. DOI:10.1002/imt2.76 2023
QMD: A new method to quantify microbial absolute abundance differences between groups [0.03%]
QMD：一种量化组间微生物绝对丰度差异的新方法
Kai Mi,Yuyu Xu,Yiqing Li et al.
Kai Mi et al.
A new method, quantification of microbial absolute abundance differences (QMD), was proposed to estimate the microbial absolute abundance changes of each taxon under different conditions based on the microbial relative abundance. Compared w...
Ecological dynamics imposes fundamental challenges in community-based microbial source tracking [0.03%]
生态动态在基于社区的微生物来源追踪中产生根本性挑战
Xu-Wen Wang,Lu Wu,Lei Dai et al.
Xu-Wen Wang et al.
Quantifying the contributions of possible environmental sources ("sources") to a specific microbial community ("sink") is a classical problem in microbiology known as microbial source tracking (MST). Solving the MST problem will not only he...
Pan-cancer analyses reveal molecular and clinical characteristics of cuproptosis regulators [0.03%]
泛癌分析揭示铜死亡调控因子的分子和临床特征
Changwu Wu,Jun Tan,Xiangyu Wang et al.
Changwu Wu et al.
Imbalance in copper homeostasis can be lethal. A recent study found that excess copper induces cell death in a way that has never been characterized before, which is dependent on mitochondrial stress and is referred to as "cuproptosis." The...
Using PhyloSuite for molecular phylogeny and tree-based analyses [0.03%]
使用PhyloSuite进行分子系统发育和基于树的分析
Chuan-Yu Xiang,Fangluan Gao,Ivan Jakovlić et al.
Chuan-Yu Xiang et al.
Phylogenetic analysis has entered the genomics (multilocus) era. For less experienced researchers, conquering the large number of software programs required for a multilocus-based phylogenetic reconstruction can be somewhat daunting and tim...
Differentiation strategies for planktonic bacteria and eukaryotes in response to aggravated algal blooms in urban lakes [0.03%]
城市湖泊藻华加重下细菌和真核生物的分化策略分析
Wenjie Wan,Hans-Peter Grossart,Donglan He et al.
Wenjie Wan et al.
Aggravated algal blooms potentially decreased environmental heterogeneity. Different strategies of planktonic bacteria and eukaryotes in response to aggravated algal blooms. Environmental constraints of plankton showed different patterns ov...
Strategies and tools in illumina and nanopore-integrated metagenomic analysis of microbiome data [0.03%]
整合Illumina和Nanopore测序的微生物组元基因组分析策略及工具
Yu Xia,Xiang Li,Ziqi Wu et al.
Yu Xia et al.
Metagenomic strategy serves as the foundation for the ecological exploration of novel bioresources (e.g., industrial enzymes and bioactive molecules) and biohazards (e.g., pathogens and antibiotic resistance genes) in natural and engineered...
Review
iMeta. 2023 Jan 9;2(1):e72. DOI:10.1002/imt2.72 2023