Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions [0.03%]
长读段测序时代的植物基因组从头组装：进展、挑战与未来方向
Boas Pucker,Iker Irisarri,Jan de Vries et al.
Boas Pucker et al.
Third-generation long-read sequencing is transforming plant genomics. Oxford Nanopore Technologies and Pacific Biosciences are offering competing long-read sequencing technologies and enable plant scientists to investigate even large and co...
Spatio-temporal imaging of cell fate dynamics in single plant cells using luminescence microscope [0.03%]
基于生物发光的显微镜技术观测单细胞层面植物细胞命运决定的时空成像研究
Shunji Shimadzu,Tomoyuki Furuya,Yasuko Ozawa et al.
Shunji Shimadzu et al.
Stem cell fates are spatio-temporally regulated during plant development. Time-lapse imaging of fluorescence reporters is the most widely used method for spatio-temporal analysis of biological processes. However, excitation light for imagin...
MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite sequencing data [0.03%]
甲基化得分(MethylScore)，一个从大规模植物全基因组亚硫酸氢盐测序数据中准确且具有上下文感知能力地识别差异性甲基化区域的流程管道
Patrick Hüther,Jörg Hagmann,Adam Nunn et al.
Patrick Hüther et al.
Whole-genome bisulfite sequencing (WGBS) is the standard method for profiling DNA methylation at single-nucleotide resolution. Different tools have been developed to extract differentially methylated regions (DMRs), often built upon assumpt...
Unidirectional versus bidirectional brushing: Simulating wind influence on Arabidopsis thaliana [0.03%]
单向与双向刷洗：模拟风对拟南芥的影响
Oleksandr Zhdanov,Michael R Blatt,Hossein Zare-Behtash et al.
Oleksandr Zhdanov et al.
Plants acclimate to various types of mechanical stresses through thigmomorphogenesis and alterations in their mechanical properties. Although resemblance between wind- and touch-induced responses provides the foundation for studies where wi...
Metabolic regulation of subcellular sucrose cleavage inferred from quantitative analysis of metabolic functions [0.03%]
基于代谢功能定量分析的亚细胞蔗糖裂解代谢调控研究
Thomas Nägele
Thomas Nägele
Quantitative analysis of experimental metabolic data is frequently challenged by non-intuitive, complex patterns which emerge from regulatory networks. The complex output of metabolic regulation can be summarised by metabolic functions whic...
Daniel H Chitwood,Joey Mullins
Daniel H Chitwood
Using conventional statistical approaches there exist powerful methods to classify shapes. Embedded in morphospaces is information that allows us to visualise theoretical leaves. These unmeasured leaves are never considered nor how the nega...
Maxwell R McReynolds,Linkan Dash,Christian Montes et al.
Maxwell R McReynolds et al.
Auxin is a key regulator of root morphogenesis across angiosperms. To better understand auxin-regulated networks underlying maize root development, we have characterized auxin-responsive transcription across two time points (30 and 120 min)...
Quantitative effects of environmental variation on stomatal anatomy and gas exchange in a grass model [0.03%]
一种草本植物模型的环境变异对气孔解剖和气体交换的量化效应
Tiago D G Nunes,Magdalena W Slawinska,Heike Lindner et al.
Tiago D G Nunes et al.
Stomata are cellular pores on the leaf epidermis that allow plants to regulate carbon assimilation and water loss. Stomata integrate environmental signals to regulate pore apertures and adapt gas exchange to fluctuating conditions. Here, we...
NCodR: A multi-class support vector machine classification to distinguish non-coding RNAs in Viridiplantae [0.03%]
基于植物多类支持向量机的非编码RNA识别模型研究
Chandran Nithin,Sunandan Mukherjee,Jolly Basak et al.
Chandran Nithin et al.
Non-coding RNAs (ncRNAs) are major players in the regulation of gene expression. This study analyses seven classes of ncRNAs in plants using sequence and secondary structure-based RNA folding measures. We observe distinct regions in the dis...
Asal Atakhani,Léa Bogdziewiez,Stéphane Verger
Asal Atakhani
Cell-cell adhesion is a fundamental feature of multicellular organisms. To ensure multicellular integrity, adhesion needs to be tightly controlled and maintained. In plants, cell-cell adhesion remains poorly understood. Here, we argue that ...