Metagenomic assembly reveals hosts and mobility of common antibiotic resistome in animal manure and commercial compost [0.03%]
元基因组组装揭示了动物粪便和商业堆肥中常见抗生素耐药宿主及其传播力
Tianlei Qiu,Linhe Huo,Yajie Guo et al.
Tianlei Qiu et al.
Background: Antibiotics and antibiotic resistance genes (ARGs) used in intensive animal farming threaten human health worldwide; however, the common resistome, ARG mobility, and ARG host composition in different animal ma...
Nutrient-limited subarctic caves harbour more diverse and complex bacterial communities than their surface soil [0.03%]
营养匮乏的亚北极洞穴中的细菌群落比地表土壤中更加多样和复杂
Ana Sofia Reboleira,Kasun H Bodawatta,Nynne M R Ravn et al.
Ana Sofia Reboleira et al.
Background: Subarctic regions are particularly vulnerable to climate change, yet little is known about nutrient availability and biodiversity of their cave ecosystems. Such knowledge is crucial for predicting the vulnerab...
Landscape scale ecology of Tetracladium spp. fungal root endophytes [0.03%]
大型景观生态学中的根内生真菌Tetracladium属物种研究
Anna Lazar,Ryan M Mushinski,Gary D Bending
Anna Lazar
Background: The genus Tetracladium De Wild. (Ascomycota) has been traditionally regarded as a group of Ingoldian fungi or aquatic hyphomycetes-a polyphyletic group of phylogenetically diverse fungi which grow on decaying ...
Efficient management of the nitritation-anammox microbiome through intermittent aeration: absence of the NOB guild and expansion and diversity of the NOx reducing guild suggests a highly reticulated nitrogen cycle [0.03%]
通过间歇曝气高效管理硝化-厌氧氨氧化微生物群：亚硝酸盐氧化菌古饲guild的缺失以及NOx还原guild的扩展和多样性表明了一个高度网状化的氮循环
Alejandro Palomo,Daniela Azevedo,María Touceda-Suárez et al.
Alejandro Palomo et al.
Obtaining efficient autotrophic ammonia removal (aka partial nitritation-anammox, or PNA) requires a balanced microbiome with abundant aerobic and anaerobic ammonia oxidizing bacteria and scarce nitrite oxidizing bacteria. Here, we analyzed...
Structure and specialization of mycorrhizal networks in phylogenetically diverse tropical communities [0.03%]
具有多样系统发育的热带群落中的菌根网络的结构与专门化
Benoît Perez-Lamarque,Rémi Petrolli,Christine Strullu-Derrien et al.
Benoît Perez-Lamarque et al.
Background: The root mycobiome plays a fundamental role in plant nutrition and protection against biotic and abiotic stresses. In temperate forests or meadows dominated by angiosperms, the numerous fungi involved in root ...
Ecosystem-specific microbiota and microbiome databases in the era of big data [0.03%]
大数据时代生态系统特异性微生物资源库及其应用研究进展
Victor Lobanov,Angélique Gobet,Alyssa Joyce
Victor Lobanov
The rapid development of sequencing methods over the past decades has accelerated both the potential scope and depth of microbiota and microbiome studies. Recent developments in the field have been marked by an expansion away from purely ca...
Microplastic exposure across trophic levels: effects on the host-microbiota of freshwater organisms [0.03%]
微塑料跨营养级暴露对淡水生物宿主微生物群的影响
Javier Edo Varg,David Outomuro,Warren Kunce et al.
Javier Edo Varg et al.
Background: Microplastics are a pervasive pollutant widespread in the sea and freshwater from anthropogenic sources, and together with the presence of pesticides, they can have physical and chemical effects on aquatic org...
Methanol utilizers of the rhizosphere and phyllosphere of a common grass and forb host species [0.03%]
一种常见的草本和阔叶宿主植物根围和叶围的甲醇利用微生物群落
Saranya Kanukollu,Rainer Remus,Alexander Martin Rücker et al.
Saranya Kanukollu et al.
Background: Managed grasslands are global sources of atmospheric methanol, which is one of the most abundant volatile organic compounds in the atmosphere and promotes oxidative capacity for tropospheric and stratospheric ...
specificity: an R package for analysis of feature specificity to environmental and higher dimensional variables, applied to microbiome species data [0.03%]
特异性：一个用于分析特征的环境及高维度变量特定性的R语言软件包及其在微生物组物种数据中的应用
John L Darcy,Anthony S Amend,Sean O I Swift et al.
John L Darcy et al.
Background: Understanding the factors that influence microbes' environmental distributions is important for determining drivers of microbial community composition. These include environmental variables like temperature an...
Metadata harmonization-Standards are the key for a better usage of omics data for integrative microbiome analysis [0.03%]
元数据和谐化-标准是整合微生物组分析中更好利用组学数据的关键
Tomislav Cernava,Daria Rybakova,François Buscot et al.
Tomislav Cernava et al.
Background: Tremendous amounts of data generated from microbiome research studies during the last decades require not only standards for sampling and preparation of omics data but also clear concepts of how the metadata i...