Zahrate El Oula Frihi,Julian Barreiro-Gomez,Salah Eddine Choutri et al.
Zahrate El Oula Frihi et al.
In this paper, we present an age-and-migration-dependent Markov-chain-based model for the propagation of the COVID-19, together with a user-friendly MatLab-based toolbox. Furthermore, we present examples to simulate the propagation of the v...
Graphical interface for automated management of motion artifact within fMRI acquisitions: INFOBAR [0.03%]
基于图形的界面自动化管理功能磁共振成像采集过程中的运动伪影：INFOBAR
Manish Anand,Jed A Diekfuss,Alexis B Slutsky-Ganesh et al.
Manish Anand et al.
Independent Component Analysis-based Automatic Removal of Motion Artifacts (ICA-AROMA; Pruim et al., 2015) is a robust approach to remove brain activity related to head motion within functional magnetic resonance imaging (fMRI) datasets. Ho...
pksensi: An R package to apply global sensitivity analysis in physiologically based kinetic modeling [0.03%]
PKSensi：一个应用于生理基元动力学模型的全局敏感性分析R包
Nan-Hung Hsieh,Brad Reisfeld,Weihsueh A Chiu
Nan-Hung Hsieh
Sensitivity analysis (SA) is an essential tool for modelers to understand the influence of model parameters on model outputs. It is also increasingly used in developing and assessing physiologically based kinetic (PBK) models. For instance,...
CameraTransform: A Python package for perspective corrections and image mapping [0.03%]
CameraTransform：一个用于透视校正和图像映射的Python包
Richard C Gerum,Sebastian Richter,Alexander Winterl et al.
Richard C Gerum et al.
Camera images and video recordings are simple and non-invasive tools to investigate animals in their natural habitat. Quantitative evaluations, however, often require an exact reconstruction of object positions, sizes, and distances in the ...
Automating image-based mesh generation and manipulation tasks in cardiac modeling workflows using Meshtool [0.03%]
使用Meshtool自动化心脏建模工作流程中的基于图像的网格生成和操作任务
Aurel Neic,Matthias A F Gsell,Elias Karabelas et al.
Aurel Neic et al.
Advanced cardiac modeling studies rely on the ability to generate and functionalize personalized in silico models from tomographic multi-label image stacks. Eventually, this is used for building virtual cohorts that capture the variability ...
MALTA: a calculator for estimating the coverage with shRNA, CRISPR, and cDNA libraries [0.03%]
MALTA：一个用于估算shRNA、CRISPR和cDNA库覆盖率的计算工具
Venkatramanan Krishnamani,Mark A Stamnes,Robert C Piper
Venkatramanan Krishnamani
Genetic screens using shRNA, CRISPR, or cDNA libraries rely on adequately transferring the library into cells for further assay. These libraries can have many different elements and each element can be present at different copy numbers with...
A software companion for compressively sensed time-frequency processing of sparse nonstationary signals [0.03%]
压缩感知时频处理稀疏非平稳信号的软件伴侣
Ervin Sejdić,Irena Orović,Srdjan Stanković
Ervin Sejdić
Compressive sensing is a computational framework for acquisition and processing of sparse signals at sampling rates below the rates mandated by the Nyquist sampling theorem. In this paper, we present seven MATLAB functions for compressive s...
Ravishankar Sundararaman,Kendra Letchworth-Weaver,Kathleen A Schwarz et al.
Ravishankar Sundararaman et al.
Density-functional theory (DFT) has revolutionized computational prediction of atomic-scale properties from first principles in physics, chemistry and materials science. Continuing development of new methods is necessary for accurate predic...
The Co-regulation Data Harvester: automating gene annotation starting from a transcriptome database [0.03%]
协同调控数据收集器：从转录组数据库开始自动进行基因注释
Lev M Tsypin,Aaron P Turkewitz
Lev M Tsypin
Identifying co-regulated genes provides a useful approach for defining pathway-specific machinery in an organism. To be efficient, this approach relies on thorough genome annotation, a process much slower than genome sequencing per se. Tetr...
Sheng-Cheng Huang,Sara Lee,Allen Wang et al.
Sheng-Cheng Huang et al.
A probability wheel app is intended to facilitate communication between two people, an "investigator" and a "participant," about uncertainties inherent in decision-making. Traditionally, a probability wheel is a mechanical prop with two col...