PixelDeck: A local-first media library manager for biomedical imaging [0.03%]
PixelDeck：一种以本地为主的生物医学影像媒体库管理器
Benjamin L Kidder
Benjamin L Kidder
Biomedical imaging workflows generate large collections of histology, fluorescence microscopy, and high-throughput imaging assets that are difficult to organize, search, and reuse using conventional file systems. We present PixelDeck, an op...
Xavier Michalet
Xavier Michalet
Fluorescence Lifetime Imaging (FLI) is a technique recording the temporal decay of fluorescence emission at every pixel of an image. Analyzing the information embedded in FLI dataset requires either fitting the decay to a predefined model u...
ICOBA: A highly customizable iterative imagej macro for optimization of image co-localization batch analysis [0.03%]
ICOBA：一种高度可定制的迭代ImageJ宏，用于优化图像共定位批处理分析
Tyler J Rolland,Emily R Hudson,Luke A Graser et al.
Tyler J Rolland et al.
Co-localization analysis is pivotal for understanding protein interactions in biomedical research, yet existing ImageJ and FIJI plug-ins often lack automated multi-channel capabilities, impeding throughput and introducing potential user bia...
Alex C Soupir,Julia Wrobel,Jordan H Creed et al.
Alex C Soupir et al.
The increasing use of spatial molecular technologies such as multiplex immunofluorescence (mIF) and spatial transcriptomics (SRT) has driven the need for robust statistical methods to analyze the spatial architecture of tissues. However, a ...
HistomicsTK: A Python toolkit for pathology image analysis algorithms [0.03%]
HistomicsTK：用于病理图像分析算法的Python工具包
Fattaneh Pourakpour,Ákos Szölgyén,Ramin Nateghi et al.
Fattaneh Pourakpour et al.
Growth in the digital imaging of glass tissue slides has produced petabytes of data, however, this data remains underutilized in biomedical research due in part to a lack of open-source software. HistomicsTK is an open-source Python package...
SWCRTsimulator: A simulation-based platform for power estimation in stepped wedge cluster randomized trials with interval-censored outcomes [0.03%]
基于模拟的平台在具有区间截断结果的分步轮换集群随机试验中的应用与功率估计
Xintong Lu,Lee Kennedy-Shaffer,Veronika Shabanova
Xintong Lu
Stepped wedge cluster randomized trials (SWCRTs) have become increasingly popular across various disciplines, particularly in public health and clinical research, as they allow evaluations of interventions rolled out sequentially across clu...
ContDataQC: An R package and Shiny app for quality control of continuous water quality sensor data [0.03%]
ContDataQC：一个用于连续水质传感器数据质量控制的R软件包和Shiny应用程序
Michael J Pennino,Jen Stamp,Erik W Leppo et al.
Michael J Pennino et al.
The ContDataQC R package is a free, open-source tool that was developed to help water quality monitoring programs perform quality control (QC) procedures on continuous sensor data. ContDataQC helps users speed up and standardize the QC proc...
India Policy Insights: A geospatial and temporal data science and visualization platform and architecture [0.03%]
印度政策洞察：地理时空数据科学及可视化平台与架构
Devika Jain,Joaquin Kachinovsky,Gonzalo Rodriguez et al.
Devika Jain et al.
The Geographic Insights Lab at Harvard University developed India Policy Insights (IPI), a spatio-temporal visualization platform for policymakers. IPI provides insights from 122 indicators across population, health, and socioeconomic metri...
Stefano Chiaradonna,Petar Jevtić,Beckett Sterner
Stefano Chiaradonna
We present a Python package called Modular Petri Net Assembly Toolkit (MPAT) that empowers users to easily create large-scale, modular Petri Nets for various spatial configurations, including extensive spatial grids or those derived from sh...
Ahren B Fitzroy,Rebecca M C Spencer
Ahren B Fitzroy
Sleep science has seen a surge in discoveries fueled by enhanced data processing approaches to sleep physiology recordings. PSGpower is a MATLAB toolbox designed to make these processing steps more efficient and standardized. PSGpower impor...