Different orthology inference algorithms generate similar predicted orthogroups among Brassicaceae species [0.03%]
不同的直系同源推断算法可以生成类似的拟南芥近缘物种的直系同源簇预测结果
Irene T Liao,Karen E Sears,Lena C Hileman et al.
Irene T Liao et al.
Premise: Orthology inference is crucial for comparative genomics, and multiple algorithms have been developed to identify putative orthologs for downstream analyses. Despite the abundance of proposed solutions, including ...
Guidelines for quantifying leaf chlorophyll content via non-destructive spectrometry [0.03%]
基于非破坏性光谱法量化叶片叶绿素含量的指导标准
Giancarlo M Chiarenza,Eve Slavich,Angela T Moles
Giancarlo M Chiarenza
Premise: Leaf chlorophyll is a fundamental bioindicator used in several fields; however, we lack clear guidelines for optimizing sampling efforts and producing comparable studies. ...
expowo: An R package for mining global plant diversity and distribution data [0.03%]
expowo：一个用于挖掘全球植物多样性与分布数据的R包
Débora C Zuanny,Bruno Vilela,Peter W Moonlight et al.
Débora C Zuanny et al.
Premise: Data on plant distribution and diversity from natural history collections and taxonomic databases are increasingly becoming available online as exemplified by the Royal Botanic Gardens, Kew's Plants of the World ...
Jessie A Pelosi,Ruth Davenport,W Brad Barbazuk et al.
Jessie A Pelosi et al.
Premise: The extraction of high-quality RNA is the critical first step for the analysis of gene expression and gene space. This remains particularly challenging in plants, and especially in ferns, where the disruption of ...
BAD2matrix: Phylogenomic matrix concatenation, indel coding, and more [0.03%]
BAD2矩阵：系统基因组矩阵连接、空位编码等多功能工具
Nelson R Salinas,Gil Eshel,Gloria M Coruzzi et al.
Nelson R Salinas et al.
Premise: Common steps in phylogenomic matrix production include biological sequence concatenation, morphological data concatenation, insertion/deletion (indel) coding, gene content (presence/absence) coding, removing unin...
florabr: An R package to explore and spatialize species distribution using Flora e Funga do Brasil [0.03%]
Florabr：一个使用巴西植物和真菌数据库探索和空间化物种分布的R包
Weverton C F Trindade
Weverton C F Trindade
Premise: The Flora e Funga do Brasil project is the most comprehensive effort to reliably document Brazilian plant and fungal diversity. It involves the collaborative work of hundreds of taxonomists, integrating detailed ...
Truly the best of both worlds: Merging lineage-specific and universal probe kits to maximize phylogenomic inference [0.03%]
真正的两全其美：融合谱系特异性和通用探针试剂盒以最大化系统基因组学推断
Luiz Henrique M Fonseca,Pieter Asselman,Katherine R Goodrich et al.
Luiz Henrique M Fonseca et al.
Premise: Hybridization capture kits are now commonly used for reduced representation approaches in genomic sequencing, with both universal and clade-specific kits available. Here, we present a probe kit targeting 799 low-...
Jacob S Suissa,Gisel Y De La Cerda,Leland C Graber et al.
Jacob S Suissa et al.
Premise: There is a general lack of consensus on the best practices for filtering of single-nucleotide polymorphisms (SNPs) and whether it is better to use SNPs or include flanking regions (full "locus") in phylogenomic a...
FlowerMate: Multidimensional reciprocity and inaccuracy indices for style-polymorphic plant populations [0.03%]
花粉媒介：风格多形植物种群的多维度互惠与误差指数
Violeta Simón-Porcar,A Jesús Muñoz-Pajares,Juan Arroyo et al.
Violeta Simón-Porcar et al.
Premise: Heterostyly in plants promotes pollen transfer between floral morphs, because female and male sex organs are located at roughly reciprocal heights within the flowers of each morph. Reciprocity indices, which asse...
Developing Asparagaceae1726: An Asparagaceae-specific probe set targeting 1726 loci for Hyb-Seq and phylogenomics in the family [0.03%]
鹿蹄草科Asparagaceae1726性状谱系发育研究：针对鹿蹄草科的1726个位点的杂交序列和谱系基因组学研究中的特异性探针集研发
Philip C Bentz,Jim Leebens-Mack
Philip C Bentz
Premise: Target sequence capture (Hyb-Seq) is a cost-effective sequencing strategy that employs RNA probes to enrich for specific genomic sequences. By targeting conserved low-copy orthologs, Hyb-Seq enables efficient phy...