Leveraging target enrichment and genome skimming (Hyb-Seq) of herbarium collections to unlock timber DNA barcoding [0.03%]
利用目标富集和基因组概貌分析（Hyb-Seq）解锁腊叶收藏木材DNA条形码技术
Sidonie Bellot,Dyana Ndiade Bourobou,Camila Quintero-Berns et al.
Sidonie Bellot et al.
Premise: DNA barcoding for timber species identification requires comprehensive reference datasets, informative DNA barcodes, and cost-effective protocols. We developed a workflow leveraging Hyb-Seq (target capture sequen...
Detecting cryptic ghost lineage introgression in four-taxon genomic datasets [0.03%]
四种基因组数据集中隐秘幽灵谱系渐渗的检测
Evan S Forsythe,Blaine S Pappa,Darren A Clavette et al.
Evan S Forsythe et al.
Premise: Hybridization and introgression are pervasive evolutionary forces that have played fundamental roles in shaping the diversity of wild and domesticated plants. Four-taxon tests for introgression provide a reliable...
HapAsmbl: A reference-aided pipeline for assembling haplotypes in Nanopore amplicon sequence data of polymorphic populations [0.03%]
基于纳米孔扩增子测序数据的多态群体单倍型拼接工具HapAsmbl
Ayodele Oluwaseyi Fakoya,Augustine Chen,Rowan Paul Herridge et al.
Ayodele Oluwaseyi Fakoya et al.
Premise: Advances in long-read sequencing offer new possibilities to investigate haplotype diversity across multiple genes in plants and other taxa through multi-locus, long-read amplicon sequencing (multi-locus LRAS). De...
HybSuite: An integrated pipeline for hybrid capture phylogenomics from reads to trees [0.03%]
HybSuite：从读段到系统树的杂交捕获区室基因组学综合流程管道
Yu-Xuan Liu,Zi-Jia Lu,Wyckliffe Omondi Omollo et al.
Yu-Xuan Liu et al.
Premise: Hybrid capture sequencing (Hyb-Seq) is a widely used approach in phylogenomics, providing efficient access to targeted genomic regions. However, deriving high-quality phylogenetic trees from raw sequencing reads ...
Detecting introgression from phylogenetic invariant site patterns using machine learning [0.03%]
基于系统发育不变位点模式利用机器学习检测谱系渗入
Patrick F McKenzie,Deren A R Eaton
Patrick F McKenzie
Premise: Detecting historical introgression among populations or species from genomic data is a common goal in evolutionary genetics. Most current methods fall into two major categories: network inference and admixture in...
tanggle: An R package for the visualization of phylogenetic networks [0.03%]
Tangle：一个用于系统发育网络可视化的R包
Klaus Schliep,Marta Vidal-García,Leann Biancani et al.
Klaus Schliep et al.
Premise: Phylogenetic trees depict evolutionary relationships among taxa. However, they are strictly bifurcating structures that do not take into account several types of evolutionary events such as horizontal gene transf...
Ancient hybridization and phylogenetic discordance: Exploring evolutionary complexity in Asteraceae [0.03%]
古老杂交和系统发育分歧：探讨菊科植物的进化复杂性
Paige A Ellestad,Erika R Moore-Pollard,Carolina M Siniscalchi et al.
Paige A Ellestad et al.
Premise: Conflicting phylogenetic signals are common in plant phylogenomics and often reflect evolutionary histories shaped by processes like hybridization, incomplete lineage sorting, and whole-genome duplication (WGD). ...
Off-target metagenomics: Leveraging whole genome sequencing to study the bacteriome of the liverwort Calasterella californica [0.03%]
靶标元基因组学：利用全基因组测序研究加州小立叶苔的菌群
Ixchel S González-Ramírez,Michael J Song,Elijah C Mehlferber et al.
Ixchel S González-Ramírez et al.
Premise: The recovery of non-target organism reads, especially when whole organisms are sampled, constitutes a great opportunity for studying microbial communities. The increase in whole genome sequencing feasibility and ...
Correction to "Conservation applications of niche modeling: Native and naturalized ferns may compete for limited Hawaiian dryland habitat" [0.03%]
对“生态位模型在保护领域的应用：本地和自然化的蕨类植物可能竞相争夺有限的夏威夷旱地生境”的更正
[This corrects the article DOI: 10.1002/aps3.11598.]. © 2026 The Author(s). Applications in Plant Sciences published by Wiley Periodicals LLC on behalf ...
Published Erratum
Applications in plant sciences. 2026 Mar 25;14(2):e70052. DOI:10.1002/aps3.70052 2026
Assessing the viability of genebanked seeds from rare, wild plants native to the United States using the D.E.A.D. paradigm [0.03%]
利用D.E.A.D.范式评估美国本土珍稀野生植物种子库中种子的可行性
Christina Walters,Lisa M Hill,Katherine D Heineman et al.
Christina Walters et al.
Premise: Genebanks must maintain viable seeds for decades. Seeds that germinate are clearly alive, but some seeds, often from wild populations, do not germinate because they are dormant, empty, aged, or damaged (D.E.A.D.)...