Investigating plant disease outbreaks with long-read metagenomics: sensitive detection and highly resolved phylogenetic reconstruction applied to Xylella fastidiosa [0.03%]
基于长读长宏基因组学调查植物病害爆发：弗式非洲氯叶斑病菌的敏感检测和高分辨率系统发育重建研究
Marcela A Johnson,Haijie Liu,Elizabeth Bush et al.
Marcela A Johnson et al.
Early disease detection is a prerequisite for enacting effective interventions for disease control. Strains of the bacterial plant pathogen Xylella fastidiosa have recurrently spread to new crops in new countries causing devastating outbrea...
Impacts of Mycoplasma agalactiae restriction-modification systems on pan-epigenome dynamics and genome plasticity [0.03%]
Mycoplasma agalactiae限制修饰系统对泛表观基因组动力学和基因组可塑性的影响
Emilie Dordet-Frisoni,Céline Vandecasteele,Rachel Contarin et al.
Emilie Dordet-Frisoni et al.
DNA methylations play an important role in the biology of bacteria. Often associated with restriction modification (RM) systems, they are important drivers of bacterial evolution interfering in horizontal gene transfer events by providing a...
Carriage prevalence and genomic epidemiology of Staphylococcus aureus among Native American children and adults in the Southwestern USA [0.03%]
美国西南部原住民儿童和成人中的金黄色葡萄球菌带菌流行率及基因组流行病学研究
Eleonora Cella,Catherine G Sutcliffe,Carol Tso et al.
Eleonora Cella et al.
Native American individuals in the Southwestern USA experience a higher burden of invasive Staphylococcus aureus disease than the general population. However, little is known about S. aureus carriage in these communities. A cross-sectional ...
Core-, pan- and accessory genome analyses of Clostridium neonatale: insights into genetic diversity [0.03%]
Clostridium neonatale核心基因组、核心基因组和辅助基因组分析：遗传多样性洞察
Victoria Mesa,Marc Monot,Laurent Ferraris et al.
Victoria Mesa et al.
Clostridium neonatale is a potential opportunistic pathogen recovered from faecal samples in cases of necrotizing enterocolitis (NEC), a gastrointestinal disease affecting preterm neonates. Although the C. neonatale species description and ...
Helicobacter cinaedi is a human-adapted lineage in the Helicobacter cinaedi/canicola/'magdeburgensis' complex [0.03%]
Helicobacter cinaedi是Helicobacter cinaedi/canicola/'magdeburgensis'谱系中适应人类的谱系
Yasuhiro Gotoh,Yuya Atsuta,Takako Taniguchi et al.
Yasuhiro Gotoh et al.
Helicobacter cinaedi is an enterohepatic Helicobacter that causes bacteremia and other diseases in humans. While H. cinaedi-like strains are isolated from animals, including dog isolates belonging to a recently proposed H. canicola, little ...
Cesar Montelongo Hernandez,Catherine Putonti,Alan J Wolfe
Cesar Montelongo Hernandez
Escherichia coli is often associated with urinary tract infection (UTI). Antibiotic resistance in E. coli is an ongoing challenge in managing UTI. Extrachromosomal elements - plasmids - are vectors for clinically relevant traits, such as an...
Small and intermediate size structural RNAs in the unicellular parasite Cryptosporidium parvum as revealed by sRNA-seq and comparative genomics [0.03%]
基于sRNA测序和比较基因组学揭示的卡氏肺孢子虫中的小型和中型结构RNA
Yiran Li,Rodrigo P Baptista,Xiaohan Mei et al.
Yiran Li et al.
Small and intermediate-size noncoding RNAs (sRNAs and is-ncRNAs) have been shown to play important regulatory roles in the development of several eukaryotic organisms. However, they have not been thoroughly explored in Cryptosporidium parvu...
Enterovirus D68 epidemic, UK, 2018, was caused by subclades B3 and D1, predominantly in children and adults, respectively, with both subclades exhibiting extensive genetic diversity [0.03%]
2018年英国肠道病毒D68流行主要由B3和D1亚谱系引起，二者均表现出广泛的基因多样性
Hannah C Howson-Wells,Theocharis Tsoleridis,Izzah Zainuddin et al.
Hannah C Howson-Wells et al.
Enterovirus D68 (EV-D68) has recently been identified in biennial epidemics coinciding with diagnoses of non-polio acute flaccid paralysis/myelitis (AFP/AFM). We investigated the prevalence, genetic relatedness and associated clinical featu...
Mobility of antimicrobial resistance across serovars and disease presentations in non-typhoidal Salmonella from animals and humans in Vietnam [0.03%]
越南动物和人类中非伤寒沙门氏菌血清型之间的抗菌药物耐药性的流动性及其不同临床类型之间的抗微生物药物的耐药性特征分析
Samuel Bloomfield,Vu Thuy Duong,Ha Thanh Tuyen et al.
Samuel Bloomfield et al.
Non-typhoidal Salmonella (NTS) is a major cause of bacterial enterocolitis globally but also causes invasive bloodstream infections. Antimicrobial resistance (AMR) hampers the treatment of these infections and understanding how AMR spreads ...
Whokaryote: distinguishing eukaryotic and prokaryotic contigs in metagenomes based on gene structure [0.03%]
基于基因结构区分元基因组中的真核和原核片段的程序Whokaryote
Lotte J U Pronk,Marnix H Medema
Lotte J U Pronk
Metagenomics has become a prominent technology to study the functional potential of all organisms in a microbial community. Most studies focus on the bacterial content of these communities, while ignoring eukaryotic microbes. Indeed, many m...