Benchmarking the topological accuracy of bacterial phylogenomic workflows using in silico evolution [0.03%]
利用计算进化评估细菌性基因组工作流程的拓扑精度基准测试
Boas C L van der Putten,Niek A H Huijsmans,Daniel R Mende et al.
Boas C L van der Putten et al.
Phylogenetic analyses are widely used in microbiological research, for example to trace the progression of bacterial outbreaks based on whole-genome sequencing data. In practice, multiple analysis steps such as de novo assembly, alignment a...
Identifying large-scale recombination and capsular switching events in Streptococcus agalactiae strains causing disease in adults in the UK between 2014 and 2015 [0.03%]
2014-2015年间导致英国成人感染的B群链球菌毒株发生大规模重组和荚膜交换事件的研究
Uzma Basit Khan,Elita Jauneikaite,Robert Andrews et al.
Uzma Basit Khan et al.
Cases of invasive group B streptococcal infection in the adult UK population have steadily increased over recent years, with the most common serotypes being V, III and Ia, but less is known of the genetic background of these strains. We hav...
Phase variation in the glycosyltransferase genes of Pasteurella multocida associated with outbreaks of fowl cholera on free-range layer farms [0.03%]
多杀巴斯德菌半乳糖转移酶基因的相变异与放养蛋鸡场禽伤寒爆发的关系研究
Lida Omaleki,Patrick J Blackall,Thom Cuddihy et al.
Lida Omaleki et al.
Fowl cholera caused by Pasteurella multocida has re-emerged in Australian poultry production since the increasing adoption of free-range production systems. Currently, autogenous killed whole-cell vaccines prepared from the isolates previou...
Boas C L van der Putten,C I Mendes,Brooke M Talbot et al.
Boas C L van der Putten et al.
Computational algorithms have become an essential component of research, with great efforts by the scientific community to raise standards on development and distribution of code. Despite these efforts, sustainability and reproducibility ar...
Genomic characterization of multidrug-resistant Salmonella serovar Kentucky ST198 isolated in poultry flocks in Spain (2011-2017) [0.03%]
西班牙家禽群中分离的耐多药的索尔纳拉 Kentucky ST198 型菌株的基因组特征（2011-2017）
Clara Samper-Cativiela,Bernabé Diéguez-Roda,Filipa Trigo da Roza et al.
Clara Samper-Cativiela et al.
Salmonella Kentucky is commonly found in poultry and rarely associated with human disease. However, a multidrug-resistant (MDR) S. Kentucky clone [sequence type (ST)198] has been increasingly reported globally in humans and animals. Our aim...
Fatal affairs - conjugational transfer of a dinoflagellate-killing plasmid between marine Rhodobacterales [0.03%]
致命事件——海洋红杆菌目的接合转移类病毒质粒事件
Jürgen Tomasch,Victoria Ringel,Hui Wang et al.
Jürgen Tomasch et al.
The roseobacter group of marine bacteria is characterized by a mosaic distribution of ecologically important phenotypes. These are often encoded on mobile extrachromosomal replicons. So far, conjugation had only been experimentally proven b...
Population structure of ocular Streptococcus pneumoniae is highly diverse and formed by lineages that escape current vaccines [0.03%]
眼部肺炎链球菌的种群结构高度多样，并且由逃避当前疫苗的谱系组成
Camille Andre,John Rouhana,Suelen Scarpa de Mello et al.
Camille Andre et al.
Streptococcus pneumoniae is a leading cause of ocular infections including serious and sight-threatening conditions. The use of pneumococcal conjugate vaccines (PCV) has substantially reduced the incidence of pneumonia and invasive pneumoco...
Areej S Alsheikh-Hussain,Nouri L Ben Zakour,Brian M Forde et al.
Areej S Alsheikh-Hussain et al.
Fish mortality caused by Streptococcus iniae is a major economic problem in aquaculture in warm and temperate regions globally. There is also risk of zoonotic infection by S. iniae through handling of contaminated fish. In this study, we pr...
Sophie Belman,Chrispin Chaguza,Narender Kumar et al.
Sophie Belman et al.
Mitis group Streptococcus are human obligate bacteria residing in the nasopharynx and oral cavity. They comprise both commensal and pathogenic species with the most well-known being Streptococcus pneumoniae - a leading cause of meningitis a...
Population genomics of the food-borne pathogen Vibrio fluvialis reveals lineage associated pathogenicity-related genetic elements [0.03%]
食物borne病原菌Vibrio fluvialis的群体基因组表明与谱系相关的致病相关遗传元件
Hongyuan Zheng,Yuanming Huang,Ping Liu et al.
Hongyuan Zheng et al.
Vibrio fluvialis is a food-borne pathogen with epidemic potential that causes cholera-like acute gastroenteritis and sometimes extraintestinal infections in humans. However, research on its genetic diversity and pathogenicity-related geneti...