Diversity of polyomaviruses and papillomaviruses in penguins from eastern and western Antarctica [0.03%]
东南极和西南极企鹅的多瘤病毒和乳头瘤病毒多样性研究
Melanie Regney,Virginia Morandini,Annie E Schmidt et al.
Melanie Regney et al.
Polyomaviruses and papillomaviruses are icosahedral viruses with small circular dsDNA genomes. Limited information on their diversity and evolution in avian hosts is available, with even less known regarding Antarctic penguins. Prior to thi...
Mycobacterium tuberculosis cultured in MGIT media for whole-genome sequencing application: a systematic literature review and meta-analysis [0.03%]
用于全基因组测序应用的MGIT培养基中培养的结核分枝杆菌：系统文献回顾和Meta分析
Emilyn Costa Conceição,Felicia Wells,Abhinav Sharma et al.
Emilyn Costa Conceição et al.
Whole-genome sequencing (WGS) holds promise for accurate and comprehensive diagnosis of drug resistance in Mycobacterium tuberculosis and identification of transmission events. 'Early positive cultures' (EPC) are increasingly used when WGS ...
Low-volume Plasmodium blood sample processing protocols for untargeted transcriptomics optimized using Plasmodium knowlesi [0.03%]
利用恶性疟原虫优化的低血量样本处理方案用于非靶向转录组学研究
Erin Sauve,Johanna Helena Kattenberg,Pieter Moris et al.
Erin Sauve et al.
As the importance of transcriptional variation and regulation for Plasmodium becomes more apparent, advances for non-falciparum species are hindered by our reliance on natural infections to study parasite biology. Untargeted transcriptomic ...
Global epidemiological insights on the antimicrobial resistance of Enterococcus faecium and a genomic analysis framework [0.03%]
肠球菌抗微生物药物抵抗性的全球流行病学见解及基因组分析框架
Kihyun Lee,Yoon-Ha Jang,Kuenyoul Park et al.
Kihyun Lee et al.
Enterococcus faecium is a pathogen that frequently causes infections and outbreaks in hospitals. Despite the increasing need for genomic surveillance of E. faecium, a standardized genomic analysis framework for this pathogen is lacking. We ...
Identification and response to a putatively hypervirulent, carbapenem-resistant Klebsiella pneumoniae ST395 hospital outbreak in the UK [0.03%]
英国一家医院疑似高毒力碳青霉烯类耐药肺炎克雷伯菌ST395型暴发的识别和应对措施
Mark I Garvey,Robert A Moran,Ana D Sanches Ferreira et al.
Mark I Garvey et al.
Here, we describe a putatively hypervirulent, carbapenem-resistant Klebsiella pneumoniae (hv-CRKP) outbreak. Nanopore sequencing guided the infection prevention and control (IPC) responses during the outbreak. Twelve patients were identifie...
Reproducibility and accuracy of bacterial methylome profiling using Oxford Nanopore Technologies nanopore sequencing platform [0.03%]
基于牛津纳米孔技术纳米孔测序平台的细菌甲基组谱系分析的重复性和准确性
Taylor Schababerle,Omar Hayat,Jaeone Jung et al.
Taylor Schababerle et al.
Background. Oxford Nanopore Technologies (ONT) enables direct methylome profiling using the Dorado basecaller, but the comparative performance of ONT-only versus hybrid-assembly reference-based methylation calling, particularly regarding in...
Novel roseophages provide insights into a genetically and ecologically diverse phage family [0.03%]
新颖的玫瑰噬菌体提供了关于一种在基因和生态上都具有多样性的噬菌体家族的见解
Zuqing Wu,Ying Wu,Chunmei Deng et al.
Zuqing Wu et al.
Roseobacters are prevalent in marine environments and play a crucial role in global carbon and sulphur cycles. Although many roseophages that infect roseobacters have been characterized, those infecting members of the ecologically dominant ...
Population snapshot of Streptococcus pneumoniae causing invasive disease among adults aged ≥18 years in South Africa before and after implementation of pneumococcal conjugate vaccines in 2005-2020 [0.03%]
南非洲2005-2020年实施肺炎球菌结合疫苗前后≥18岁成人侵袭性肺炎链球菌病的流行情况概述
Kedibone Maria Ndlangisa,Cebile Lekhuleni,Happy Skosana et al.
Kedibone Maria Ndlangisa et al.
Routine use of pneumococcal conjugate vaccines (PCV) in South Africa caused a decline in vaccine-associated invasive pneumococcal disease (IPD), followed by the emergence of non-PCV serotypes, driven mainly by pre-existing lineages. We dete...
No innocent bystanders: pertussis vaccination and evolutionary parallelisms between Bordetella parapertussis and Bordetella pertussis [0.03%]
无无辜旁观者：百日咳疫苗接种及Bordetella parapertussis与Bordetella pertussis的进化平行现象
Valérie Bouchez,Albert Moreno-Mingorance,Alba Mir-Cros et al.
Valérie Bouchez et al.
Pathogens adapting to the human host and to vaccination-induced immunity may follow parallel evolutionary paths. Bordetella parapertussis (Bpp) contributes significantly to the burden of whooping cough (pertussis) and shares vaccine antigen...
Metagenomics of the MAST-3 stramenopile, Incisomonas, and its associated microbiome reveals unexpected metabolic attributes and extensive nutrient dependencies [0.03%]
MAST-3粘体藻类Incisomonas及其相关微生物组的元基因组揭示了意想不到的代谢特征和广泛的营养依赖性
Dominic E Absolon,Victoria L N Jackson,Adam Monier et al.
Dominic E Absolon et al.
Protists are polyphyletic single-celled eukaryotes that underpin global ecosystem functioning, particularly in the oceans. Most remain uncultured, limiting the investigation of their physiology and cell biology. MArine STramenopiles (MASTs)...