Genetic traits of IncK2 plasmids and the Escherichia coli host underlying the association to the chicken gut [0.03%]
IncK2质粒及其在鸡肠道定植的宿主菌Escherichia coli的遗传特性分析
Marta Rozwandowicz,Manal AbuOun,Patricia Alba et al.
Marta Rozwandowicz et al.
This manuscript presents the phylogeny and conservation of IncK2 plasmids in Europe. It also provides insights into genetic traits responsible for IncK2 plasmids and its Escherichia coli host adaptation to the chicken gut. Fifty-eight E. co...
Genomic characterization of invasive disease-causing Streptococcus pneumoniae in Lebanon, 2003-2025 [0.03%]
2003-2025年导致侵袭性疾病的肺炎链球菌在黎巴嫩的基因组特征
Fatima Dakroub,Alannah C King,Fata Akl et al.
Fatima Dakroub et al.
Background. Streptococcus pneumoniae is a major human pathogen responsible for invasive pneumococcal diseases (IPDs). We utilized whole-genome sequencing to assess the impact of pneumococcal conjugate vaccines (PCVs) on the pneumococcal pop...
Structural and functional characteristics of faecal, vaginal and colostrum microbiota in high-yielding sows [0.03%]
高产母猪粪便、阴道和初乳微生物的结构和功能特征
Yu Pi,Zixi Wei,Lei Xu et al.
Yu Pi et al.
Recent studies have highlighted the critical roles of the microbiota in faeces, vagina and colostrum in reproductive success and piglet development. Understanding the structural and functional dynamics of these microbial communities is esse...
Vitamin B12-associated interactions between Mesorhizobium sp. TaiHu and Synechococcus sp. PCC 7002 revealed by multi-omics analysis [0.03%]
基于多组学分析的维生素B₁₂介导固氮菌与蓝藻相互作用研究
Gaopeng Liu,Peng Bai,Minglei Ren et al.
Gaopeng Liu et al.
The marine cyanobacterium Synechococcus sp. PCC 7002 (Syn7002) is a model organism that lacks the gene cluster required for vitamin B12 biosynthesis, necessitating cooperative interactions with other microbes. In this study, we established ...
Integrative profiling of Helicobacter pylori clinical isolates: virulence genes, antimicrobial susceptibility and genetic diversity in gastric cancer risk stratification [0.03%]
Helicobacter pylori临床分离株的整合性谱型分析：毒力基因、抗菌敏感性和遗传多样性在胃癌风险分层中的作用
Ying Zhang,Yanyan Shang,Zhenkai Li et al.
Ying Zhang et al.
Background . Helicobacter pylori infection is a major risk factor for gastric cancer (GC), especially in East Asia. However, the mechanisms through which bacterial strain heterogeneity contributes to GC risk remain poorly understood. This s...
Erratum: Global population structure of Shiga toxin-producing Escherichia coli O103:H2 and the variation in their major virulence factor-encoding genetic elements [0.03%]
图改正：产志贺毒素型大肠杆菌O103:H2的全球种群结构及其主要毒力因子编码遗传元件的变异性
Itsuki Taniguchi,Yo Morimoto,Yoko Kimura et al.
Itsuki Taniguchi et al.
Published Erratum
Microbial genomics. 2026 Mar;12(3):001661. DOI:10.1099/mgen.0.001661 2026
Nanopore long-read-only genome assembly of clinical Enterobacterales isolates is complete and accurate [0.03%]
基于纳米孔长读段的临床肠杆菌目分离株基因组从头组装完整且准确
Dorottya Nagy,Valentina Pennetta,Gillian Rodger et al.
Dorottya Nagy et al.
Whole bacterial genome sequence reconstruction using Oxford Nanopore Technologies ('Nanopore') long-read-only sequencing may offer a lower-cost, higher-throughput alternative for pathogen surveillance to 'hybrid' assembly with recent improv...
Aneuploidy, polyploidy and loss of heterozygosity distinguish serial bloodstream isolates of Candida albicans [0.03%]
染色体非整倍性、多倍性和杂合性丢失可区分白色念珠菌的连续血液分离株
Nancy E Scott,Xin Zhou,Elizabeth Wash et al.
Nancy E Scott et al.
The opportunistic pathogen Candida albicans is the leading cause of invasive Candida infections worldwide. Genomic variation between C. albicans clinical isolates complicates efforts to pinpoint novel genetic variants underlying antifungal ...
Full-genome analysis of emerging Coxsackievirus B4 genotype D strains associated with herpangina in eastern China [0.03%]
中国东部与咽峡炎相关的新型Coxsackievirus B4基因型D毒株的全基因组分析
Xiaosong Hu,Yuxiang Sun,Bo Xing et al.
Xiaosong Hu et al.
In 2024 herpangina surveillance in Yuhuan City, China, two Coxsackievirus B4 strains (Z168, Z296) were identified. Full-length genome sequencing revealed that both strains belonged to genotype D that was first documented in eastern China. T...
Phylogenomic and functional insights into Staphylococcus shinii from blueberry production environments: intra-species structure, probiotic traits and antimicrobial resistance [0.03%]
来自蓝莓生产环境的金黄色葡萄球菌基因组和功能洞察：种内结构，益生菌特性及抗菌素抗性
Cecilio Valadez-Cano,Rhiannonn L Wallace,Jiacheng Chuan et al.
Cecilio Valadez-Cano et al.
Staphylococcus shinii is a recently proposed staphylococcal species identified in animal-associated microbiomes and fermented foods, with promising probiotic and biotechnological applications. However, its genomic diversity, functional trai...