High genomic diversity of Vibrio parahaemolyticus from underexplored tropical northern Australia: a baseline for future surveillance [0.03%]
来自澳大利亚热带北部未被充分研究地区的副溶血性弧菌的高基因组多样性：未来监测的基础
Mirjam Kaestli,Karen Gibb,Claire E Hedges et al.
Mirjam Kaestli et al.
Vibrio parahaemolyticus is an autochthonous marine bacterium that causes gastroenteritis after ingestion of raw or undercooked seafood and, less frequently, wound and tissue infections. Genomic information from northern Australia is scarce,...
Metagenomic identification of disease-causing Salmonella enterica serovars and antimicrobial resistance genes from paediatric faecal samples [0.03%]
基于儿童粪便样本的病原沙门氏菌血清型和抗性基因的元基因组鉴定
Agata H Dziegiel,Vu Thuy Duong,Samuel J Bloomfield et al.
Agata H Dziegiel et al.
Background. Nontyphoidal Salmonella (NTS) is a common cause of enterocolitis and a major cause of death in children in low- and middle-income countries (LMICs). High antimicrobial resistance (AMR) prevalence in LMICs reduces treatment optio...
Cappable-Seq reveals the transcriptional landscape of stress responses in the bacterial endosymbiont Wolbachia [0.03%]
Cappable-_seq测序揭示沃尔巴克体细菌内共生菌应激反应的转录图谱
Youseuf Suliman,Zhiru Li,Amit Sinha et al.
Youseuf Suliman et al.
Bacterial endosymbionts are highly prevalent among invertebrate animals, in which they can confer fitness benefits such as pathogen defence and/or act as reproductive manipulators, inducing phenotypes including cytoplasmic incompatibility (...
Optimization of DNA extraction methods from pig farm wastewater for pathogen detection using metagenomic sequencing [0.03%]
用于元基因组测序的猪场废水病原微生物检测的DNA提取方法优化
Manavi Muralidhar,Muhammad Noman Naseem,Jose Ramon Botella Mesa et al.
Manavi Muralidhar et al.
Wastewater can be a useful sample to monitor disease outbreaks in the community, as it was demonstrated during the recent Severe acute respiratory syndrome coronavirus 2 pandemic. Due to housing conditions, diseases can rapidly spread withi...
Mechanistic insights into the formation and spread of carbapenem-resistant hypervirulent Klebsiella pneumoniae via an IncHI1B/repB hybrid virulence plasmid [0.03%]
携带IncHI1B/repB杂合毒力质粒的碳青霉烯耐药高毒力肺炎克雷伯菌的形成及传播机制研究
Binghui Huo,Yuxuan Liu,LinPing Fan et al.
Binghui Huo et al.
Objectives. The transfer of virulence plasmids facilitates the emergence of carbapenem-resistant hypervirulent Klebsiella pneumoniae (CR-hvKP), complicating infection management. This study identifies a conjugative IncHI1B/repB hybrid virul...
CoDing Sequence Typer (CDST): a fast, simple, decentralized and interoperable solution for bacterial genomic typing and clustering [0.03%]
一种快速、简单、分散且互操作的细菌基因组分型和聚类解决方案（CDST）：编码序列类型器(CDST)
Menghan Li,Séamus Fanning,Zhemin Zhou et al.
Menghan Li et al.
We present a fully decentralized MD5 hash-based framework that indexes predicted coding sequences (CDSs) and computes pairwise genomic distances without locus annotation or a central database. The method is implemented in the open-source Co...
SeroBA(v2.0) and SeroBAnk: a robust genome-based serotyping scheme and comprehensive atlas of capsular diversity in Streptococcus pneumoniae [0.03%]
SeroBA（v2.0）和SeroBAnk：基于基因组的肺炎链球菌群系方案和荚膜多样性的综合图谱
Oliver Lorenz,Alannah C King,Harry C H Hung et al.
Oliver Lorenz et al.
The unprecedented number of Streptococcus pneumoniae (the pneumococcus) genomes sequenced in recent years has accelerated the discovery of novel serotypes and highlighted the genetic diversity both between and within each serotype. A novel ...
Enhanced prediction of expression control in bacterial biosynthetic gene clusters via genomic and functional data integration [0.03%]
基于基因组和功能数据整合的细菌生物合成基因簇表达调控预测增强模型
Silvia Ribeiro Monteiro,Sébastien Rigali
Silvia Ribeiro Monteiro
Accurate identification of transcription factor binding sites (TFBSs) is fundamental to understanding gene regulation. Traditional position weight matrix (PWM) motif-based methods scan genomes to predict potential TFBSs based on sequence si...
The emergence of sexually transmissible Shigella flexneri serotype 1b between 2019 and 2024 in England: a descriptive epidemiological study [0.03%]
英格兰2019年至2024年性传播的福氏志贺菌1b血清型的出现：描述性流行病学研究
Ailie Robinson,Ella V Rodwell,Neville Q Verlander et al.
Ailie Robinson et al.
Background. Shigella species are pathogenic bacteria that cause gastrointestinal symptoms ranging from mild watery diarrhoea to bacillary dysentery. Transmission is faecal-oral and historically associated with international travel. Recently...
Reclaiming microbiology: scientists as community members and advocacy leaders [0.03%]
重塑微生物学：科学家作为社区成员和倡导领导者的作用
I&#x;ah Donovan-Banfield,Nikea Pittman,Ariangela Kozik et al.
I&#x;ah Donovan-Banfield et al.