MMETHANE: interpretable AI for predicting host status from microbial composition and metabolomics data [0.03%]
基于微生物组成和代谢组学数据预测宿主状态的可解释人工智能-MMETHANE
Jennifer J Dawkins,Georg K Gerber
Jennifer J Dawkins
Background: Metabolite production, consumption, and exchange are intimately involved with host health and disease, as well as being key drivers of host-microbiome interactions. Despite the increasing prevalence of dataset...
Correction: Altered ruminal microbiome tryptophan metabolism and their derived 3-indoleacetic acid inhibit ruminal inflammation in subacute ruminal acidosis goats [0.03%]
纠正：改变的瘤胃微生物群色氨酸代谢及其衍生的3-吲哚乙酸可抑制亚急性瘤胃酸中毒山羊的瘤胃炎症
Xiaodong Chen,Jingyi Xu,Lei Zhang et al.
Xiaodong Chen et al.
Published Erratum
Microbiome. 2025 Dec 6;13(1):252. DOI:10.1186/s40168-025-02305-5 2025
Conserved environmental adaptations of stream microbiomes in the hyporheic zone across North America [0.03%]
北美的地表水流微生物群在地下水环境中保守的环境适应性
Tom L Stach,Jörn Starke,Feriel Bouderka et al.
Tom L Stach et al.
Background: Stream hyporheic zones represent a unique ecosystem at the interface of stream water and surrounding sediments, characterized by high heterogeneity and accelerated biogeochemical activity. These zones-represen...
Deciphering the personalized functional redundancy hierarchy in the gut microbiome [0.03%]
破译肠道微生物组的个性化功能冗余层次结构
Yiqi Jiang,Lijia Che,Shuai Cheng Li
Yiqi Jiang
Background: Functional redundancy (FR) in the human gut microbiome is crucial for maintaining stability and resilience, exhibiting a hierarchical structure. However, the precise configuration and functional implications o...
Diabetes alters the supragingival microbiome through plasma-to-saliva migration of glucose and fructose [0.03%]
糖尿病通过血浆到唾液的葡萄糖和果糖迁移改变龈上微生物群
Akito Sakanaka,Masahiro Furuno,Asuka Ishikawa et al.
Akito Sakanaka et al.
Background: Dental caries, a dysbiotic biofilm disease driven by polymicrobial acidogenesis, often coexists with type 2 diabetes (T2D). Previous studies suggest covarying relationships between circulating and salivary met...
Transcriptome-guided discovery of novel plant-associated genes in a rhizosphere Pseudomonas [0.03%]
基于转录组的指导发现与根际假单胞菌相关的新基因
Zaki Saati-Santamaría,Lihuén Iraí González-Dominici,Alejandro Jiménez-Gómez et al.
Zaki Saati-Santamaría et al.
Background: Microorganisms play important ecological roles during interactions with plants, with some strains promoting plant performance. However, the molecular basis of bacterial adaptation to the plant environment rema...
Integrated meta-omics reveals AFB1 dose-dependent remodeling of the rumen microbiome-virome-metabolome axis driving metabolic impairment in goats [0.03%]
整合元组学揭示AFB1剂量依赖性地重塑了山羊瘤胃微生物组-噬菌体组-代谢组轴从而导致代谢障碍
Fucan Li,Ming Yan,Donghua Su et al.
Fucan Li et al.
Background: Aflatoxin B1 (AFB1), a highly carcinogenic and hepatotoxic mycotoxin frequently contaminating animal feed, presents serious health risks to both humans and livestock. Although AFB1's hepatotoxicity and other o...
Guillaume Parpex,Carole Nicco,Benoît Chassaing et al.
Guillaume Parpex et al.
Endometriosis affects approximately 10% of women of reproductive age and is characterized by the presence of endometrial-like tissue outside the uterine cavity, leading to chronic pelvic pain, infertility, and a significant reduction in qua...
Diverse quorum sensing systems regulate microbial communication and biogeochemical processes in deep-sea cold seeps [0.03%]
多样化的群体感应系统调节深海冷泉中的微生物交流及生物地球化学过程
Jiaxue Peng,Xinyue Liu,Jieni Wang et al.
Jiaxue Peng et al.
Background: Quorum sensing is a fundamental chemical communication mechanism that enables microorganisms to coordinate behavior and adapt to environmental conditions. However, its contribution in deep-sea cold seep ecosys...
Metagenomic profiling of airborne microbial communities from aircraft filters and face masks [0.03%]
飞机过滤器和口罩中空气微生物群的元基因组分析
Oliyad Jeilu,Jack T Sumner,Anahid A Moghadam et al.
Oliyad Jeilu et al.
Background: Airborne microbial communities, although often challenging to study due to low biomass, play crucial roles in public health and pathogen transmission. Through shotgun metagenomics, this study utilizes non-inva...