Association analysis of repetitive elements and R-loop formation across species [0.03%]
跨物种的重复序列与R环形成的关联分析
Chao Zeng,Masahiro Onoguchi,Michiaki Hamada
Chao Zeng
Background: Although recent studies have revealed the genome-wide distribution of R-loops, our understanding of R-loop formation is still limited. Genomes are known to have a large number of repetitive elements. Emerging ...
The Dfam community resource of transposable element families, sequence models, and genome annotations [0.03%]
Dfam转座元件家族、序列模型和基因组注释社区资源
Jessica Storer,Robert Hubley,Jeb Rosen et al.
Jessica Storer et al.
Dfam is an open access database of repetitive DNA families, sequence models, and genome annotations. The 3.0-3.3 releases of Dfam ( https://dfam.org ) represent an evolution from a proof-of-principle collection of transposable element famil...
Ema Etchegaray,Magali Naville,Jean-Nicolas Volff et al.
Ema Etchegaray et al.
Transposable elements (TEs) are major components of all vertebrate genomes that can cause deleterious insertions and genomic instability. However, depending on the specific genomic context of their insertion site, TE sequences can sometimes...
SeqURE - a new copy-capture based method for sequencing of unknown Retroposition events [0.03%]
SeqURE：一种用于未知逆转座事件测序的新拷贝捕获方法
Alexander Y Komkov,Shamil Z Urazbakhtin,Maria V Saliutina et al.
Alexander Y Komkov et al.
Background: Retroelements (REs) occupy a significant part of all eukaryotic genomes including humans. The majority of retroelements in the human genome are inactive and unable to retrotranspose. Dozens of active copies ar...
Intruder (DD38E), a recently evolved sibling family of DD34E/Tc1 transposons in animals [0.03%]
动物中的新型DD34E/Tc1转座子家族成员入侵者(DD38E)
Bo Gao,Wencheng Zong,Csaba Miskey et al.
Bo Gao et al.
Background: A family of Tc1/mariner transposons with a characteristic DD38E triad of catalytic amino acid residues, named Intruder (IT), was previously discovered in sturgeon genomes, but their evolutionary landscapes rem...
Correction to: Characterising a human endogenous retrovirus(HERV)-derived tumour-associated antigen: enriched RNA-Seq analysis of HERV-K(HML-2) in mantle cell lymphoma cell lines [0.03%]
题为“特征描述一种人类内源性逆转录病毒（HERV）衍生的肿瘤相关抗原：套细胞淋巴瘤细胞系中HERV-K (HML-2) 的富集RNA测序分析”的勘误表
Witold Tatkiewicz,James Dickie,Franchesca Bedford et al.
Witold Tatkiewicz et al.
An amendment to this paper has been published and can be accessed via the original article.
Published Erratum
Mobile DNA. 2020 Nov 30;11(1):31. DOI:10.1186/s13100-020-00226-8 2020
Characterisation of mobile genetic elements in Mycoplasma hominis with the description of ICEHo-II, a variant mycoplasma integrative and conjugative element [0.03%]
Mycoplasma hominis的可移动遗传元件表征及其新型整合子ICEHo-II的鉴定
Birgit Henrich,Stephanie Hammerlage,Sebastian Scharf et al.
Birgit Henrich et al.
Background: Mobile genetic elements are found in genomes throughout the microbial world, mediating genome plasticity and important prokaryotic phenotypes. Even the cell wall-less mycoplasmas, which are known to harbour a ...
Comprehensive genomic analysis reveals dynamic evolution of endogenous retroviruses that code for retroviral-like protein domains [0.03%]
综合性基因组分析揭示了编码逆转录病毒样蛋白结构域的内源性逆转录病毒的动态演化过程
Mahoko Takahashi Ueda,Kirill Kryukov,Satomi Mitsuhashi et al.
Mahoko Takahashi Ueda et al.
Background: Endogenous retroviruses (ERVs) are remnants of ancient retroviral infections of mammalian germline cells. A large proportion of ERVs lose their open reading frames (ORFs), while others retain them and become e...
Twenty years of transposable element analysis in the Arabidopsis thaliana genome [0.03%]
阿拉伯芥基因体转座元件二十年的分析
Hadi Quesneville
Hadi Quesneville
Transposable elements (TEs) are mobile repetitive DNA sequences shown to be major drivers of genome evolution. As the first plant to have its genome sequenced and analyzed at the genomic scale, Arabidopsis thaliana has largely contributed t...
Evolution of pogo, a separate superfamily of IS630-Tc1-mariner transposons, revealing recurrent domestication events in vertebrates [0.03%]
pogo进化的研究，作为一个独立的IS630-Tc1-千禧转座子超家族，在脊椎动物中揭示了反复 domestication 事件
Bo Gao,Yali Wang,Mohamed Diaby et al.
Bo Gao et al.
Background: Tc1/mariner and Zator, as two superfamilies of IS630-Tc1-mariner (ITm) group, have been well-defined. However, the molecular evolution and domestication of pogo transposons, once designated as an important fam...