Transposable elements in the era of data science EMBO course: a call for open, accessible, and collaborative TE resources [0.03%]
大数据科学时代的转座子：建立开放、可接近及合作的转座子资源EMBO课程呼吁
Alexandre Rossi Paschoal,Fabiana Rodrigues de Goes,Wojciech Makałowski et al.
Alexandre Rossi Paschoal et al.
This community letter represents a collective outcome from the EMBO Practical Course "Transposable Elements in the Era of Data Science" held at the Rosalind Franklin Institute from 12 to 16 May 2025, Didcot, United Kingdom ( https://meeting...
Interactions of antiphage defense systems in the ESKAPE pathogen plasmids [0.03%]
ESKAPE病原菌质粒中抗噬菌体防御系统的相互作用
Adeel Farooq,Asma Rafique,Eunyoung Han et al.
Adeel Farooq et al.
Background: The global rise of multidrug resistant (MDR) ESKAPE pathogens represents a serious threat to antimicrobial therapy. While phage therapy has re-emerged as a promising alternative, its effectiveness may be compr...
TE_Bench: a foundational benchmarking workflow for transposable element annotation pipelines [0.03%]
TE_Bench：可移植元件注释流水线的基础基准工作流
Hannah P Kania,Sierra A Seifert,Anne D Yoder
Hannah P Kania
Background: Methods for computational discovery of transposable elements (TEs) in DNA sequences are under continual development. Although many TE annotation pipelines have been published, differences in their methods are ...
Transposable element dynamics and regulatory role in sika deer (Cervus nippon) antler development [0.03%]
鹿茸发育过程中转座子的动态表达及调控作用
Qianghui Wang,Haihua Xing,Yukai Ma et al.
Qianghui Wang et al.
Background: Deer antlers represent one of the few mammalian organs capable of complete regeneration, yet the underlying genomic regulatory mechanisms remain incompletely understood. Transposable elements (TEs), as key dri...
Unifying Repbase and Dfam: a new open foundation for transposable element research [0.03%]
统合Repbase和Dfam：转座子研究的新开放基础
Kenji K Kojima,Arian F A Smit,Weidong Bao et al.
Kenji K Kojima et al.
Repbase and Dfam, the two foundational resources for transposable element annotation, are being unified into a single, fully open access framework, with Repbase released under CC-0 and its core curation team joining the Dfam project. ...
Aide Macias-Muñoz
Aide Macias-Muñoz
Transposable elements (TEs) contribute to genome expansions, gene duplications, and the evolution of gene regulatory networks. Recent work has highlighted the role of TE domestication in contributing to regulatory programs during animal dev...
Glomhopper-a subfamily of DUF3504-encoding CryptonA elements in Glomeromycota [0.03%]
隐子菌门内编码DUF3504家族蛋白的Crypton A元件的一个亚科（glomhopper）
Marianna Krysińska,Drishtee Barua,Anna Muszewska
Marianna Krysińska
Background: Transposable elements drive genomic changes and are mobilized by specific nucleases. Among them are tyrosine recombinases (YRs), which mediate DNA cleavage and rejoining. YR-encoding elements, such as DIRS, Ng...
Stones in genomic storms: transposable element-driven variation in Prunus fruit trees [0.03%]
桃和李的基因组暴风雨中的石头：转座元件驱动的变异
Attila Hegedűs,Beti Ivanovska,Júlia Halász
Attila Hegedűs
Transposable elements (TEs) are major components of plant genomes and drivers of structural and functional diversification. In Prunus species, including peach, almond, apricot, cherry, and plum, TEs constitute more than half of the genome a...
Transposable elements in hematopoietic stem cells upon aging and myeloid malignancies [0.03%]
造血干细胞衰老和髓系肿瘤中的转座元件
Emilie Elvira-Matelot,Françoise Porteu
Emilie Elvira-Matelot
Transposable elements (TEs) constitute nearly half of the human genome and profoundly influence hematopoietic stem cell (HSC) biology. In this review, we synthesize current evidence demonstrating that TEs exert dual and context-dependent ro...
Howler monkey Platy-1 and Alu SINEs: a resource for Alouatta genomics [0.03%]
吼猴Platy-1和Alu短分散重复元件：建立Alouatta基因组的资源
Jerilyn A Walker,Jessica M Storer,Sarah O Massey et al.
Jerilyn A Walker et al.
Recent discovery of two lineage-specific Platy-1 SINE (Short INterspersed Element) subfamilies, active within the genome of mantled howler monkey (Alouatta palliata) [AloPal_v1], prompted analyses by polymerase chain reaction (PCR) to evalu...