Chromosome-scale genome assembly of Sauvagesia rhodoleuca (Ochnaceae) provides insights into its genome evolution and demographic history [0.03%]
基于染色体的Sauvagesia rhodoleuca基因组组装揭示了其基因组进化和群体历史
Tian-Wen Xiao,Xin-Feng Wang,Zheng-Feng Wang et al.
Tian-Wen Xiao et al.
Sauvagesia rhodoleuca is an endangered species endemic to southern China. Due to human activities, only six fragmented populations remain in Guangdong and Guangxi. Despite considerable conservation efforts, its demographic history and evolu...
Diversity, evolution and transcription of endogenous retroviruses in Chiroptera genomes [0.03%]
蹄兔基因组内源性反转录病毒的多样性、进化和转录
Zhi-Jian Zhou,Yang Xiao,Jie Fang et al.
Zhi-Jian Zhou et al.
Bats (Chiroptera) are a taxonomic group of immense biological and ecological importance. They are primary reservoirs and carriers of various zoonotic viruses. Endogenous retroviruses (ERVs) originate from ancient retroviruses invading the h...
Genome Survey and Evolutionary Analysis of Eight Lamprotula Species: SSR Profiling, Mitochondrial Characterization, and Population Dynamics Inference [0.03%]
八种滑丽花甲基因组概览及进化分析：SSR图谱、线粒体特征和群体动态推断
Min Jiang,Qi Liu,Chao Jiang et al.
Min Jiang et al.
Freshwater bivalves are vital to aquatic ecosystems but face severe global threats. Understanding their genomic traits and evolution is crucial for effective conservation. This study conducted whole-genome sequencing on eight Lamprotula spe...
Thin-diaPASEF: diaPASEF for maximizing proteome coverage in single-shot proteomics [0.03%]
超薄diaPASEF：单次运行中实现最大蛋白质组覆盖度的diaPASEF方法
Ryo Konno,Masaki Ishikawa,Daisuke Nakajima et al.
Ryo Konno et al.
Proteomics using mass spectrometry (MS) has significantly advanced, offering deep insights into complex proteomes. The timsTOF MS platform with its parallel accumulation-serial fragmentation (PASEF) technology has achieved high scan speeds ...
Dynamic integration and evolutionary trajectory of endogenous IHHNV elements in crustacean genomes [0.03%]
甲壳动物基因组中内源IHHNV元件的动态整合及进化轨迹
Xiaoyun Zhong,Jianbo Yuan,Xiaojun Zhang et al.
Xiaoyun Zhong et al.
Endogenous viral elements (EVEs) serve as molecular fossils that record the ancient co-evolutionary arms race between viruses and their hosts. In this study, by analyzing 105 host crustacean genomes, we identified 252 infectious hypodermal ...
Nearly T2T, phased genome assemblies of corals reveal haplotype diversity and the evolutionary process of gene expansion [0.03%]
接近完美的基因组组装揭示了造礁珊瑚的单倍型多样性及基因扩张的进化过程
Takeshi Takeuchi,Yoshihiko Suzuki,Eiichi Shoguchi et al.
Takeshi Takeuchi et al.
Gene family expansion illustrates a critical aspect of evolutionary adaptation. However, the mechanisms by which gene family expansions emerge and are maintained in the genome remain unclear. Here, we report de novo, nearly telomere-to-telo...
Reference-based chromosome-scale assembly of Japanese barley (Hordeum vulgare ssp. vulgare) cultivar Hayakiso 2 [0.03%]
参考基因组指导的日本大麦（粟亚种）“早生青”染色体水平基因组组装
Tsuyoshi Tanaka,Yuhi Haraguchi,Takatomo Todoroki et al.
Tsuyoshi Tanaka et al.
Current advances in next generation sequencing (NGS) technology and assembling programs permits construct chromosome-level genome assemblies in various plants. In contrast to resequencing, the genome sequences provide comprehensive annotati...
Hybrid genome assembly of the widespread bat Rhinolophus lepidus provides insights into susceptibility to SARS-CoV-2 infection and climate change threat [0.03%]
广泛分布的中华扁鼻蝠（Rhinolectus lepidus）混合基因组组装为SARS-CoV-2感染易感性和气候变化威胁提供见解
Kritika M Garg,Dolyce H W Low,Geraldine Lee et al.
Kritika M Garg et al.
Bats are known reservoirs for many viruses of zoonotic potential and can tolerate or clear infections efficiently. They are important hosts for multiple coronaviruses and harbor ancestral lineages of coronaviruses known to cause diseases in...
Manipulating alternative end-joining alters carbon-ion beam-induced genome mutation profiles in Arabidopsis thaliana [0.03%]
操控拟南芥替代末端连接改变碳离子束诱导的基因组突变谱型
Jing Long,Jian Zhao,Jingmin Chen et al.
Jing Long et al.
DNA double-strand breaks (DSBs) repair via POLQ-mediated alternative end-joining (Alt-EJ) is error-prone and mutagenic. However, Alt-EJ is often inhibited by classical nonhomologous end-joining (C-NHEJ) or homologous recombination, the prec...