AlleleMiner: A long-read pipeline for gene-wise de novo allele phasing and variant detection in diploid citrus cultivars [0.03%]
基于长读段的二倍体柑橘品种基因型新 alleles 相位及变异检测Pipeline：AlleleMiner
Yukinari Kiryu,Yoshihiro Kawahara,Tomoko Endo et al.
Yukinari Kiryu et al.
Allelic variation is a critical determinant of agronomic traits in heterozygous crops. Most existing approaches define variation as reference-anchored differences, such as SNPs or structural variants, confining allelic diversity to variant ...
Silver chimaera genome highlights lineage-specific sex chromosome and opsin gene evolution in holocephalans [0.03%]
银皱唇鲨基因组揭示了全头类动物谱系特异性性染色体和视蛋白基因的进化
Akinori Teramura,Mitsutaka Kadota,Shotaro Hirase et al.
Akinori Teramura et al.
Cartilaginous fishes are divided into holocephalans and elasmobranchs, and they offer valuable systems for analyzing the genetic basis of adaptation to diverse habitats and the evolution of chromosomal organization. Genomic studies on carti...
Chromosome-level genome assembly of the Gerbera (Gerbera hybrida) using HiFi long-read and Hi-C technologies [0.03%]
利用HiFi长读和Hi-C技术对杂种非洲菊（Gerbera hybrida）染色体水平基因组的组装
Yuta B Aoyagi,Riki Shimada,Hideki Hirakawa et al.
Yuta B Aoyagi et al.
Gerbera hybrida is one of the most popular ornamental plants and also serves as a valuable model plant within the Asteraceae family. Here, we report both the nuclear and organellar genome assemblies and annotations of G. hybrida, which was ...
Chromosome-scale genome assembly of Malcolmia littorea using long-read sequencing and single-pollen genotyping technologies [0.03%]
基于长读取测序和单花粉基因分型技术的 Malcolmia littorea 染色体水平基因组组装
Kenta Shirasawa,Kazutoshi Yoshitake,Haruka Kondo et al.
Kenta Shirasawa et al.
Malcolmia littorea, a member of the family Brassicaceae, is adapted to coastal and sandy environments and has become a model in studies of reproductive barriers. However, genomic resources for the species are limited. Here, with the aim of ...
Hirokazu Yano,Kentaro Arikawa,Haruo Ikeda et al.
Hirokazu Yano et al.
Nontuberculous mycobacteria occasionally harbor clustered tRNA genes, referred to as a tRNA array unit, which is considered a putative antidefense system within their genomes. However, the precise genomic location of these tRNA array units ...
Whole genome analysis of toxic Papilionidae butterflies utilizing aristolochic acid, Pachliopta aristolochiae and Byasa alcinous [0.03%]
利用 Aristolochic 酸的毒蝴蝶(Papilionidae)全基因组分析，Pachliopta aristolochiae 和 Byasa alcinous
Shinya Komata,Rei Kajitani,Takahiro Yamabe et al.
Shinya Komata et al.
Several species of toxic butterflies are known, including those from the Troidini tribe of the Papilionidae, which accumulate aristolochic acid from their host plants in Aristolochiae. However, the molecular mechanisms involved in utilizing...
The genome of Pleurosigma provides insights into the evolutionary adaptations of pelagic diatoms [0.03%]
棱柱藻基因组为羽纹硅藻生态适应性进化提供新见解
Jianbo Jian,Chunhai Chen,Xiaodong Fang et al.
Jianbo Jian et al.
The diatom Pleurosigma pacificum is a newly described tropical pelagic species from the Western Pacific Ocean with one of largest genome size among published diatom genomes, making it an ideal candidate for studying adaptation to tropical o...
Patterns and drivers of genome-wide codon usage bias in the fungal order Sordariales [0.03%]
丝孢目的端丝菌目基因组密码子使用偏好的模式及驱动因素
Noah Hensen,Markus Hiltunen Thoréna,Hanna Johannesson
Noah Hensen
Here we present a study on amino acid composition, codon usage bias (CUB), and levels of selection driving codon usage in Sordariales fungi. We found that GC ending codons are used more often than AT ending codons in all Sordariales genomes...
Nuclear genome sequencing reveals the highly intron-rich architecture of the chlorarachniophyte alga Amorphochlora amoebiformis [0.03%]
核基因组测序揭示了绿藻门黏胞藻属阿氏黏藻高度内含子丰富的结构
Daichi Aoki,Honoka Saiki,Kenta Yamamoto et al.
Daichi Aoki et al.
Chlorarachniophyte algae possess complex plastids derived from endosymbiosis between a cercozoan protist and green alga. As evidence of this event, remnant nucleus of the endosymbiont, nucleomorph, is present in the plastid intermembrane sp...
The chromosome-level genome of Chinese indicine cattle breed provides insights into bovine adaptation and immunity [0.03%]
中国婆罗门牛基因组测序研究揭示其适应性和免疫性相关遗传机制
Fei Ge,Yingwei Guo,Lei Xu et al.
Fei Ge et al.
Genomic research is currently undergoing a paradigm shift from reliance on a single reference sequence to the use of breed-specific genomes. Chinese indicine cattle (Bos taurus indicus), characterized by their notable tick resistance and he...