Strain-level dissection of complex rhizoplane and soil bacterial communities using single-cell genomics and metagenomics [0.03%]
基于单细胞基因组和宏基因组的复杂根际和土壤细菌菌群的株系水平解析
Masako Kifushi,Yohei Nishikawa,Masahito Hosokawa et al.
Masako Kifushi et al.
Root exudates shape root-associated microbial communities that differ from those in soil. Notably, specific microorganisms colonize the root surface (rhizoplane) and strongly associate with plants. Although retrieving microbial genomes from...
Chromosome-scale genomes of two wild flowering cherries (Cerasus itosakura and C. jamasakura) provide insights into structural evolution in Cerasus [0.03%]
两种野生樱花（Cerasus itosakura和C. jama sakura）的染色体级别基因组为Cerasus中的结构进化提供见解
Kazumichi Fujiwara,Atsushi Toyoda,Toshio Katsuki et al.
Kazumichi Fujiwara et al.
Flowering cherries (genus Cerasus) are iconic trees in Japan, celebrated for their cultural and ecological significance. Despite their prominence, high-quality genomic resources for wild Cerasus species have been limited. Here, we report ch...
Life inside a Bag: Multi-omics insights into the bagworm species Eumeta crameri [0.03%]
袋中生命——关于袋蛾物种Eumeta crameri的多组学见解
Abhisek Chakraborty,Shruti Mahajan,Vishnu Prasoodanan P K et al.
Abhisek Chakraborty et al.
Bagworms are commonly known for the well-organized case or bag surrounding them constructed using their silk and plant materials. To understand the genetic basis of these unique characteristics in bagworms, we performed multi-omics analyses...
Kenji Morikami,Yasuhiro Tanizawa,Masaru Yagura et al.
Kenji Morikami et al.
Medaka, a group of small, mostly freshwater fishes in the teleost order Beloniformes, includes the rice fish Oryzias latipes, a useful model organism studied in diverse biological fields. Chromosome-scale genome sequences of the Hd-rR strai...
Genome Assembly and Insights into Globally Invasive Red-vented Bulbul (Pycnonotus cafer) [0.03%]
全基因组组装及入侵性极强的红嘴相思鸟(Pycnonotus cafer)的群体遗传学特征解析
Martin Abraham Puthumana,Manohar S Bisht,Mitali Singh et al.
Martin Abraham Puthumana et al.
The Red-vented Bulbul (Pycnonotus cafer) of the Pycnonotidae family is one of the most invasive tropical passerine bird species. We accomplished the genome and transcriptome sequencing of P. cafer to explore the genomic basis of invasivenes...
Full-Length Hybrid Transcriptome of the Olfactory Rosette in Senegalese Sole (Solea senegalensis): An Essential Genomic Resource for Improving Reproduction on Farms [0.03%]
西非鳎鱼（Solea senegalensis）嗅觉玫瑰花的全长杂交转录组：一种改善养殖场繁殖的重要基因资源
Dorinda Torres-Sabino,Andrés Blanco,Paula R Villamayor et al.
Dorinda Torres-Sabino et al.
Senegalese sole is a promising European aquaculture species whose main challenge is that captive-born males (F1) are unable to reproduce in farms, hindering breeding programs. Chemical communication through the olfactory system is hypothesi...
Eva Šatović-Vukšić,Patrik Majcen,Miroslav Plohl
Eva Šatović-Vukšić
Repetitive DNA sequences, as transposable elements (TEs) and satellite DNA (satDNA) spread and diversify within host genomes, impacting genome biology in numerous ways. In the first part of this review, we emphasize the evolutionary importa...
Towards molecular evolutionary epigenomics with an expanded nucleotide code involving methylated bases [0.03%]
扩增甲基化碱基的分子进化表观基因组学研究
Shinya Yoshida,Ikuo Uchiyama,Masaki Fukuyo et al.
Shinya Yoshida et al.
In molecular evolution analyses, genomic DNA sequence information is usually represented in the form of 4 bases (ATGC). However, research since the turn of the century has revealed the importance of epigenetic genome modifications, such as ...
Localization of the origin of transfer (oriT) for Salmonella Genomic Island 4 (SGI-4) from Salmonella enterica serovar I 4, [5],12:i: [0.03%]
来自沙门氏菌I 4，[5]，12：i：的萨尔摩尼亚基因组岛4（SGI-4）转移起源（origT）的定位
Durga P Neupane,Bradley L Bearson,Shawn M D Bearson
Durga P Neupane
Salmonella enterica serovar I 4, [5],12:i:- (serovar I 4, [5],12:i:-) is one of the most frequent multidrug-resistant (MDR) Salmonella serovars associated with food-animal production globally, and strains often contain Salmonella genomic is...
Can classical statistics and deep learning converge on explainable, causally driven target discovery? [0.03%]
经典统计学和深度学习能否在可解释的、因果驱动的目标发现上趋于一致？
Liyin Chen
Liyin Chen
Understanding the molecular causes of complex diseases remains one of the most pressing challenges in biomedicine. Despite large-scale genome-wide association studies mapping thousands of risk loci, identifying which genetic variants truly ...