Caroline Ott,Kevin Schneider,Heinrich Lukas Weil et al.
Caroline Ott et al.
Modern research projects typically involve several measurement techniques and computational analyses, resulting in complex, multimodal research data objects. While the FAIR Principles provide a framework for making data Findable, Accessible...
Updates and validation of the Compi RNA-seq pipeline with a case study in Alzheimer's disease [0.03%]
Compi RNA-seq流程的更新与验证以及阿尔茨海默病案例研究
Rosalinda Di Gerlando,Stella Gagliardi,Hugo López-Fernández
Rosalinda Di Gerlando
RNA-seq data analysis is a multi-step process that typically includes demultiplexing, alignment to the reference genome, read counting and genome annotation, ultimately leading to differential expression analysis (DEA). Several pipelines ar...
Fragment-level FAIRness: annotating scientific data and its provenance using data fragment selectors [0.03%]
基于数据片段选择器的科学数据及其传承注释以达到片段级别的FAIR性質
Heinrich Lukas Weil,Kevin Schneider,Dominik Brilhaus et al.
Heinrich Lukas Weil et al.
Scientific communication depends on the production of FAIR (findable, accessible, interoperable, reusable) data. Yet when datasets are shared, they remain hard to interpret across domains because annotations are tied to heterogeneous file f...
Integrating cross-omics research through FAIR Digital Objects with DataPLANT [0.03%]
通过DataPLANT使用FAIR数字对象进行跨组学研究集成
Hannah Dörpholz,Rüdiger Simon,Björn Usadel et al.
Hannah Dörpholz et al.
In plant sciences, single-cell and spatial transcriptomics generate large complex datasets which require structured metadata in order to make them interoperable and reproducible. In this work, we demonstrate how the Annotated Research Conte...
Pheno-App 2.0 - a mobile app for collecting phenotypic data in plant research [0.03%]
Pheno-App 2.0——植物研究表型数据采集手机应用程序
Annedore Söchting,Danuta Schüler,Theodor Strauch et al.
Annedore Söchting et al.
Documenting plant phenotypic data in the field is a common task necessary for the preservation of crop plant biodiversity in genebanks. Today, mobile applications are used to record data more efficiently and avoid errors. The Pheno-App is a...
Evolving bioinformatics services - the journey of KPI metrics with Scorpion [0.03%]
生物信息学服务的演变-Scorpion指标的演进之旅
Manuel Feser,Daniel Arend,Sebastian Beier et al.
Manuel Feser et al.
Key Performance Indicators (KPIs) are essential for evaluating project success and establishing control mechanisms to monitor development, performance, and user acceptance of services in joint projects. However, the absence of standardized ...
The community engagement and empowerment cycle: FAIRagro's framework to foster cultural change towards FAIR RDM practices in agrosystem science and beyond [0.03%]
面向农业系统科学及更广泛领域的FAIR数据管理实践文化变革促进框架——FAIRagro社区参与和赋权循环模型
Anne Sennhenn,James M Anderson,Sophie Boße et al.
Anne Sennhenn et al.
Open Science is reshaping how research is conducted, yet the sustainable adoption of FAIR (Findable, Accessible, Interoperable, Reusable) research data management (RDM) requires more than technical infrastructures. In agrosystem sciences, h...
In silico comparative genomics and proteomics to identify potential candidates to monitor coffee plant-fungi pathogenesis [0.03%]
基于组学的计算比较基因和蛋白质组学研究,寻找监测咖啡植株-真菌病害潜在的分子标记或候选基因
Kimberly Rojas-Rojas,Paz Vieto-Cárdenas,Bernal Azofeifa-Bolaños et al.
Kimberly Rojas-Rojas et al.
Fungal pathogens pose a major threat to coffee production, yet the molecular mechanisms underlying these infections remain poorly understood. Omics data from fungal pathogens affecting coffee plants offer valuable but largely unexplored ins...
Obtaining PDC and other high-added value products from lignin by in silico genetic engineering in Novosphingobium aromaticivorans [0.03%]
通过计算基因组工程在Novosphingobium aromaticivorans中从木质素获取PDC和其他高附加值产物
Isabel María Fernández,Francisco Guil,José Manuel García
Isabel María Fernández
Lignin, the second most abundant plant biopolymer on Earth, is produced in large quantities as waste material by many industries. Researchers have studied bacterial metabolic networks as potential candidates for integrating lignin into a bi...
Systems biology graphical notation: process description language level 1 version 2.1 [0.03%]
系统生物学图形标示法：过程描述语言第1级 第2.1版
Hasan Balci,Adrien Rougny,Rupert Overall et al.
Hasan Balci et al.
The Systems Biology Graphical Notation (SBGN) is an international community effort to standardize the visualization of pathways and networks, making them accessible to scientists from diverse fields while facilitating efficient and ac-curat...