Anwai Archit,Luca Freckmann,Sushmita Nair et al.
Anwai Archit et al.
Published Erratum
Nature methods. 2025 Jun 10. DOI:10.1038/s41592-025-02745-9 2025
Spotiflow: accurate and efficient spot detection for fluorescence microscopy with deep stereographic flow regression [0.03%]
基于深度立体流回归的荧光显微镜图像精确斑点检测算法研究（Spotiflow）
Albert Dominguez Mantes,Antonio Herrera,Irina Khven et al.
Albert Dominguez Mantes et al.
Identification of spot-like structures in large, noisy microscopy images is a crucial step for many life-science applications. Imaging-based spatial transcriptomics (iST), in particular, relies on the precise detection of millions of transc...
CellNEST reveals cell-cell relay networks using attention mechanisms on spatial transcriptomics [0.03%]
基于注意力机制的细胞空间转录组数据中的细胞相互作用网络发现方法CELLNEST
Fatema Tuz Zohora,Deisha Paliwal,Eugenia Flores-Figueroa et al.
Fatema Tuz Zohora et al.
Dysregulation of communication between cells mediates complex diseases such as cancer and diabetes; however, detecting cell-cell communication at scale remains one of the greatest challenges in transcriptomics. Most current single-cell RNA ...
SpotSweeper: spatially aware quality control for spatial transcriptomics [0.03%]
SpotSweeper：空间转录组学的空间感知质量控制
Michael Totty,Stephanie C Hicks,Boyi Guo
Michael Totty
Quality control (QC) is a crucial step to ensure the reliability of data obtained from RNA sequencing experiments, including spatially resolved transcriptomics (SRT). Existing QC approaches for SRT that have been adopted from single-cell or...
Zhen-Qi Liu,Andrea I Luppi,Justine Y Hansen et al.
Zhen-Qi Liu et al.
The networked architecture of the brain promotes synchrony among neuronal populations. These communication patterns can be mapped using functional imaging, yielding functional connectivity (FC) networks. While most studies use Pearson's cor...
Krakencoder: a unified brain connectome translation and fusion tool [0.03%]
Krakencoder：一种统一的大脑连接组翻译和融合工具
Keith W Jamison,Zijin Gu,Qinxin Wang et al.
Keith W Jamison et al.
Brain connectivity can be estimated in many ways, depending on modality and processing strategy. Here, we present the Krakencoder, a joint connectome mapping tool that simultaneously bidirectionally translates between structural and functio...
Knowing when to fold 'em [0.03%]
何时应该放弃
Michael Eisenstein
Michael Eisenstein
A visual-omics foundation model to bridge histopathology with spatial transcriptomics [0.03%]
一种连接组织病理学与空间转录组学的视觉组学基础模型
Weiqing Chen,Pengzhi Zhang,Tu N Tran et al.
Weiqing Chen et al.
Artificial intelligence has revolutionized computational biology. Recent developments in omics technologies, including single-cell RNA sequencing and spatial transcriptomics, provide detailed genomic data alongside tissue histology. However...