Marleen Balvert,Johnathan Cooper-Knock,Julian Stamp et al.
Marleen Balvert et al.
Published Erratum
Genome biology. 2025 Jan 20;26(1):12. DOI:10.1186/s13059-025-03477-x 2025
Alternative silencing states of transposable elements in Arabidopsis associated with H3K27me3 [0.03%]
拟南芥中与H3K27me3相关的植物转座子沉默状态
Valentin Hure,Florence Piron-Prunier,Tamara Yehouessi et al.
Valentin Hure et al.
Background: The DNA/H3K9 methylation and Polycomb-group proteins (PcG)-H3K27me3 silencing pathways have long been considered mutually exclusive and specific to transposable elements (TEs) and genes, respectively in mammal...
Enhancer regulatory networks globally connect non-coding breast cancer loci to cancer genes [0.03%]
增强子调控网络将乳腺癌的非编码基因座与癌症基因全局相关联
Yihan Wang,Daniel A Armendariz,Lei Wang et al.
Yihan Wang et al.
Background: Genetic studies have associated thousands of enhancers with breast cancer (BC). However, the vast majority have not been functionally characterized. Thus, it remains unclear how BC-associated enhancers contrib...
Pangenome mining of the Streptomyces genus redefines species' biosynthetic potential [0.03%]
链霉菌属泛基因组采铜重新定义种的生物合成潜力
Omkar S Mohite,Tue S Jørgensen,Thomas J Booth et al.
Omkar S Mohite et al.
Background: Streptomyces is a highly diverse genus known for the production of secondary or specialized metabolites with a wide range of applications in the medical and agricultural industries. Several thousand complete o...
Relating ecological diversity to genetic discontinuity across bacterial species [0.03%]
细菌物种间生态多样性与遗传差异的相关性研究
Hemanoel Passarelli-Araujo,Thiago M Venancio,William P Hanage
Hemanoel Passarelli-Araujo
Background: Genetic discontinuity represents abrupt breaks in genomic identity among species. Advances in genome sequencing have enhanced our ability to track and characterize genetic discontinuity in bacterial population...
Graph pangenome reveals the regulation of malate content in blood-fleshed peach by NAC transcription factors [0.03%]
基于图泛基因组的NAC转录因子调控血肉桃苹果酸含量的机制研究
Wenbo Chen,Qi Xie,Jia Fu et al.
Wenbo Chen et al.
Background: Fruit acidity and color are important quality attributes in peaches. Although there are some exceptions, blood-fleshed peaches typically have a sour taste. However, little is known about the genetic variations...
Pre-processing of paleogenomes: mitigating reference bias and postmortem damage in ancient genome data [0.03%]
古基因组预处理：减轻参考偏差和古DNA数据的降解损伤
Dilek Koptekin,Etka Yapar,Kıvılcım Başak Vural et al.
Dilek Koptekin et al.
We investigate alternative strategies against reference bias and postmortem damage in low coverage paleogenomes. Compared to alignment to the linear reference genome, we show that masking known polymorphic sites and graph alignment effectiv...
Marsilea: an intuitive generalized paradigm for composable visualizations [0.03%]
火星芹属：一种直观的通用范式，用于可组合可视化
Yimin Zheng,Zhihang Zheng,André F Rendeiro et al.
Yimin Zheng et al.
Biological data visualization is challenged by the growing complexity of datasets. Traditional single-data plots or simple juxtapositions often fail to fully capture dataset intricacies and interrelations. To address this, we introduce "cro...
Resolving the source of branch length variation in the Y chromosome phylogeny [0.03%]
解码Y染色体系谱上分支长度变化的来源
Yaniv Swiel,Janet Kelso,Stéphane Peyrégne
Yaniv Swiel
Background: Genetic variation in the non-recombining part of the human Y chromosome has provided important insight into the paternal history of human populations. However, a significant and yet unexplained branch length v...
SMORE: spatial motifs reveal patterns in cellular architecture of complex tissues [0.03%]
基于空间模式识别复杂组织细胞结构中基质受体复合物的图案
Zainalabedin Samadi,Kai Hao,Amjad Askary
Zainalabedin Samadi
Deciphering the link between tissue architecture and function requires methods to identify and interpret patterns in spatial arrangement of cells. We present SMORE, an approach to detect patterns in sequential arrangements of cells and exam...