Stephen T Abedon,Jeffrey T Lejeune
Stephen T Abedon
This study considers gene location within bacteria as a function of genetic element mobility. Our emphasis is on prophage encoding of bacterial virulence factors (VFs). At least four mechanisms potentially contribute to phage encoding of ba...
The identification of functional motifs in temporal gene expression analysis [0.03%]
时间基因表达分析中功能模式的识别
Jiuzhou Song,Jaime Bjarnason,Michael G Surette
Jiuzhou Song
The identification of transcription factor binding sites is essential to the understanding of the regulation of gene expression and the reconstruction of genetic regulatory networks. The in silico identification of cis-regulatory motifs is ...
MySSP: non-stationary evolutionary sequence simulation, including indels [0.03%]
我的ssp：包括插入和删除的非平稳进化序列模拟
Michael S Rosenberg
Michael S Rosenberg
MySSP is a new program for the simulation of DNA sequence evolution across a phylogenetic tree. Although many programs are available for sequence simulation, MySSP is unique in its inclusion of indels, flexibility in allowing for non-statio...
Vivek Jayaswal,Lars S Jermiin,John Robinson
Vivek Jayaswal
The non-homogeneous model of nucleotide substitution proposed by Barry and Hartigan (Stat Sci, 2: 191-210) is the most general model of DNA evolution assuming an independent and identical process at each site. We present a computational sol...
Toni Gabaldón
Toni Gabaldón
The study of evolutionary relationships among protein sequences was one of the first applications of bioinformatics. Since then, and accompanying the wealth of biological data produced by genome sequencing and other high-throughput techniqu...
Arlequin (version 3.0): an integrated software package for population genetics data analysis [0.03%]
群体遗传数据分析综合软件包Arlequin(版本3.0)
Laurent Excoffier,Guillaume Laval,Stefan Schneider
Laurent Excoffier
Arlequin ver 3.0 is a software package integrating several basic and advanced methods for population genetics data analysis, like the computation of standard genetic diversity indices, the estimation of allele and haplotype frequencies, tes...
Jason T L Wang,Huiyuan Shan,Dennis Shasha et al.
Jason T L Wang et al.
As the size of phylogenetic databases grows, the need for efficiently searching these databases arises. Thanks to previous and ongoing research, searching by attribute value and by text has become commonplace in these databases. However, se...
Ross H Crozier,Lisa J Dunnett,Paul-Michael Agapow
Ross H Crozier
Biodiversity assessment demands objective measures, because ultimately conservation decisions must prioritize the use of limited resources for preserving taxa. The most general framework for the objective assessment of conservation worth ar...
Haseena Rajeevan,Kei-Hoi Cheung,Rohit Gadagkar et al.
Haseena Rajeevan et al.
Many kinds of microevolutionary studies require data on multiple polymorphisms in multiple populations. Increasingly, and especially for human populations, multiple research groups collect relevant data and those data are dispersed widely i...
The Austronesian Basic Vocabulary Database: from bioinformatics to lexomics [0.03%]
澳斯特罗乃西亚基本词汇数据库：从生物信息学到词元计算学
Simon J Greenhill,Robert Blust,Russell D Gray
Simon J Greenhill
Phylogenetic methods have revolutionised evolutionary biology and have recently been applied to studies of linguistic and cultural evolution. However, the basic comparative data on the languages of the world required for these analyses is o...