EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics [0.03%]
EvoPipes.net：生态与进化基因组学的生物信息工具
Michael S Barker,Katrina M Dlugosch,Louie Dinh et al.
Michael S Barker et al.
Recent increases in the production of genomic data are yielding new opportunities and challenges for biologists. Among the chief problems posed by next-generation sequencing are assembly and analyses of these large data sets. Here we presen...
A Clustering Optimization Strategy for Molecular Taxonomy Applied to Planktonic Foraminifera SSU rDNA [0.03%]
优化分子分类学的聚类策略及其在浮游有孔虫SSU rDNA的研究中的应用
Markus Göker,Guido W Grimm,Alexander F Auch et al.
Markus Göker et al.
Identifying species is challenging in the case of organisms for which primarily molecular data are available. Even if morphological features are available, molecular taxonomy is often necessary to revise taxonomic concepts and to analyze en...
Identifying the combinatorial effects of histone modifications by association rule mining in yeast [0.03%]
通过关联规则挖掘在酵母中鉴定组蛋白修饰的组合效应
Jiang Wang,Xianhua Dai,Qian Xiang et al.
Jiang Wang et al.
Eukaryotic genomes are packaged into chromatin by histone proteins whose chemical modification can profoundly influence gene expression. The histone modifications often act in combinations, which exert different effects on gene expression. ...
Molecular phylogeny of edge hill virus supports its position in the yellow Fever virus group and identifies a new genetic variant [0.03%]
边缘山病毒的分子系谱及其在黄热病毒组中的位置支持一个新的遗传变异体被识别出来
Joanne Macdonald,Michael Poidinger,John S Mackenzie et al.
Joanne Macdonald et al.
Edge Hill virus (EHV) is a mosquito-borne flavivirus isolated throughout Australia during mosquito surveillance programs. While not posing an immediate threat to the human population, EHV is a taxonomically interesting flavivirus since it r...
Maximum Likelihood Analyses of 3,490 rbcL Sequences: Scalability of Comprehensive Inference versus Group-Specific Taxon Sampling [0.03%]
基于3,490个rbcL序列的最大似然分析：全面推断与分组抽样方法的可扩展性研究
Alexandros Stamatakis,Markus Göker,Guido W Grimm
Alexandros Stamatakis
The constant accumulation of sequence data poses new computational and methodological challenges for phylogenetic inference, since multiple sequence alignments grow both in the horizontal (number of base pairs, phylogenomic alignments) as w...
An application of supertree methods to Mammalian mitogenomic sequences [0.03%]
超树方法在哺乳动物线粒体基因组序列中的应用
Véronique Campbell,François-Joseph Lapointe
Véronique Campbell
TWO DIFFERENT APPROACHES CAN BE USED IN PHYLOGENOMICS: combined or separate analysis. In the first approach, different datasets are combined in a concatenated supermatrix. In the second, datasets are analyzed separately and the phylogenetic...
Relative codon adaptation index, a sensitive measure of codon usage bias [0.03%]
相对密码子适应指数：一种敏感的密码子使用偏差衡量指标
Soohyun Lee,Seyeon Weon,Sooncheol Lee et al.
Soohyun Lee et al.
We propose a simple, sensitive measure of synonymous codon usage bias, the Relative Codon Adaptation Index (rCAI), as a way to discriminate better between highly biased and unbiased regions, compared with the widely used Codon Adaptation In...
A comparative taxonomy of parallel algorithms for RNA secondary structure prediction [0.03%]
RNA二级结构预测并行算法的比较分类学
Ra&#x;ed M Al-Khatib,Rosni Abdullah,Nur&#x;aini Abdul Rashid
Ra&#x;ed M Al-Khatib
RNA molecules have been discovered playing crucial roles in numerous biological and medical procedures and processes. RNA structures determination have become a major problem in the biology context. Recently, computer scientists have empowe...
Comparative molecular evolution of trichoderma chitinases in response to mycoparasitic interactions [0.03%]
球抱壳菌几丁质酶的比较分子进化及其对菌寄性的响应
Katarina Ihrmark,Nashwan Asmail,Wimal Ubhayasekera et al.
Katarina Ihrmark et al.
Certain species of the fungal genus Trichoderma are potent mycoparasites and are used for biological control of fungal diseases on agricultural crops. In Trichoderma, whole-genome sequencing reveal between 20 and 36 different genes encoding...
Genome-wide identification and evolutionary analysis of the animal specific ETS transcription factor family [0.03%]
动物特异性ETS转录因子家族的全基因组鉴定及进化分析
Zhipeng Wang,Qin Zhang
Zhipeng Wang
The ETS proteins are a family of transcription factors (TFs) that regulate a variety of biological processes. We made genome-wide analyses to explore the classification of the ETS gene family. We identified 207 ETS genes which encode 321 ET...