A monte carlo method for assessing the quality of duplication-aware alignment algorithms [0.03%]
一种用于评估含重复-aware比对算法质量的蒙特卡罗方法
Valerio Freschi,Alessandro Bogliolo
Valerio Freschi
The increasing availability of high throughput sequencing technologies poses several challenges concerning the analysis of genomic data. Within this context, duplication-aware sequence alignment taking into account complex mutation events i...
How Fitch-Margoliash Algorithm can Benefit from Multi Dimensional Scaling [0.03%]
改进的Fitch-Margoliash算法：% 一种利用多维标度方法的方法
Sylvain Lespinats,Delphine Grando,Eric Maréchal et al.
Sylvain Lespinats et al.
Whatever the phylogenetic method, genetic sequences are often described as strings of characters, thus molecular sequences can be viewed as elements of a multi-dimensional space. As a consequence, studying motion in this space (ie, the evol...
Evolutionary Implications and Physicochemical Analyses of Selected Proteins of Type III Polyketide Synthase Family [0.03%]
第三类聚酮合酶家族中所选蛋白质的进化意义及理化分析
V Mallika,K C Sivakumar,E V Soniya
V Mallika
Type III polyketide synthases have a substantial role in the biosynthesis of various polyketides in plants and microorganisms. Comparative proteomic analysis of type III polyketide synthases showed evolutionarily and structurally related po...
FORS-D Analysis in P. falciparum can Differentiate Classes of Genes Under Selection [0.03%]
恶性疟原虫中FORS-D分析可区分选择作用下的基因类群
Atish Kathpal,Balakota Reddy Patakottu,Swati Patankar
Atish Kathpal
FORS-D is a measure of the contribution of base order to the stem loop potential of a nucleic acid sequence and can also give information on evolutionary pressures on sequences to move away from secondary structure. Negative FORS-D values i...
Phylogenetic analysis of kindlins suggests subfunctionalization of an ancestral unduplicated kindlin into three paralogs in vertebrates [0.03%]
脊椎动物中kindlins的谱系分析及其在vertebrates中的亚功能化研究
Ammad Aslam Khan,Axel Janke,Takashi Shimokawa et al.
Ammad Aslam Khan et al.
Kindlin proteins represent a newly discovered family of evolutionarily conserved FERM domain-containing proteins. This family includes three highly conserved proteins: Kindlin-1, Kindlin-2 and Kindlin-3. All three Kindlin proteins are assoc...
SOLiDzipper: A High Speed Encoding Method for the Next-Generation Sequencing Data [0.03%]
SOLiDzipper：一种针对下一代测序数据的高速编码方法
Young Jun Jeon,Sang Hyun Park,Sung Min Ahn et al.
Young Jun Jeon et al.
Background: Next-generation sequencing (NGS) methods pose computational challenges of handling large volumes of data. Although cloud computing offers a potential solution to these challenges, transferring a large data set...
Cost-effective cloud computing: a case study using the comparative genomics tool, roundup [0.03%]
低成本的云计算研究：比较基因组学工具Roundup应用案例分析
Parul Kudtarkar,Todd F Deluca,Vincent A Fusaro et al.
Parul Kudtarkar et al.
Background: Comparative genomics resources, such as ortholog detection tools and repositories are rapidly increasing in scale and complexity. Cloud computing is an emerging technological paradigm that enables researchers ...
Philippe Ortet,Olivier Bastien
Philippe Ortet
Alignment algorithms are powerful tools for searching for homologous proteins in databases, providing a score for each sequence present in the database. It has been well known for 20 years that the shape of the score distribution looks like...
DNA Barcodes of Arabian Partridge and Philby's Rock Partridge: Implications for Phylogeny and Species Identification [0.03%]
阿拉伯石鸡和菲尔比盘旋石鸡的DNA条形码：对系统发生及物种鉴定的意义
Haseeb Ahmad Khan,Ibrahim Abdulwahid Arif,Mohammad Shobrak
Haseeb Ahmad Khan
Recently, DNA barcoding based on mitochondrial cytochrome c oxidase subunit I (COI) has gained wide attention because of simplicity and robustness of these barcodes for species identification including birds. The current GenBank records sho...
Computational identification of anthocyanin-specific transcription factors using a rice microarray and maximum boundary range algorithm [0.03%]
利用最大范围边界算法和水稻基因芯片进行花色苷专一性转录因子的计算识别研究
Chang Kug Kim,Shoshi Kikuchi,Jang Ho Hahn et al.
Chang Kug Kim et al.
This study identifies 2,617 candidate genes related to anthocyanin biosynthesis in rice using microarray analysis and a newly developed maximum boundary range algorithm. Three seed developmental stages were examined in white cultivar and tw...