Gideon C-T Wu,Feng-Chi Chen
Gideon C-T Wu
What causes the variations in evolutionary rates is fundamental to molecular evolution. However, in plants, the causes of within-gene evolutionary rate variations remain underexplored. Here we use the principal component regression to exami...
Phylogenomic and domain analysis of iterative polyketide synthases in Aspergillus species [0.03%]
曲霉属物种迭代型聚酮合酶的系统发生及结构域分析
Shu-Hsi Lin,Miwa Yoshimoto,Ping-Chiang Lyu et al.
Shu-Hsi Lin et al.
Aspergillus species are industrially and agriculturally important as fermentors and as producers of various secondary metabolites. Among them, fungal polyketides such as lovastatin and melanin are considered a gold mine for bioactive compou...
AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots [0.03%]
水稻AP2/ERF转录因子的基因组学特征及单子叶植物与双子叶植物之间的同线性关系
Muhammad Rashid,He Guangyuan,Yang Guangxiao et al.
Muhammad Rashid et al.
The transcription factor family intimately regulates gene expression in response to hormones, biotic and abiotic factors, symbiotic interactions, cell differentiation, and stress signalling pathways in plants. In this study, 170 AP2/ERF fam...
Transposon-derived and satellite-derived repetitive sequences play distinct functional roles in Mammalian intron size expansion [0.03%]
转座子衍生和卫星衍生的重复序列在哺乳动物内含子大小扩张中扮演不同的功能角色
Dapeng Wang,Yao Su,Xumin Wang et al.
Dapeng Wang et al.
Background: Repetitive sequences (RSs) are redundant, complex at times, and often lineage-specific, representing significant "building" materials for genes and genomes. According to their origins, sequence characteristics...
Cross-Genome Clustering of Human and C. elegans G-Protein Coupled Receptors [0.03%]
人和C. elegans的G蛋白偶联受体跨基因组聚类
Balasubramanian Nagarathnam,Singaravelu Kalaimathy,Veluchamy Balakrishnan et al.
Balasubramanian Nagarathnam et al.
G-protein coupled receptors (GPCRs) are one of the largest groups of membrane proteins and are popular drug targets. The work reported here attempts to perform cross-genome phylogeny on GPCRs from two widely different taxa, human versus C. ...
RY-Coding and Non-Homogeneous Models Can Ameliorate the Maximum-Likelihood Inferences From Nucleotide Sequence Data with Parallel Compositional Heterogeneity [0.03%]
RY编码和非齐次模型能够改善平行组成异质性核苷酸序列数据的最大似然推断
Sohta A Ishikawa,Yuji Inagaki,Tetsuo Hashimoto
Sohta A Ishikawa
In phylogenetic analyses of nucleotide sequences, 'homogeneous' substitution models, which assume the stationarity of base composition across a tree, are widely used, albeit individual sequences may bear distinctive base frequencies. In the...
Evolution of the RALF Gene Family in Plants: Gene Duplication and Selection Patterns [0.03%]
植物RALF基因家族的进化：基因复制和选择模式
Jun Cao,Feng Shi
Jun Cao
Rapid alkalinization factors (RALFs) are plant small peptides that could induce a rapid pH increase in the medium of plant cell suspension culture and play a critical role in plant development. The evolutionary process of the RALF gene fami...
PhyloTempo: A Set of R Scripts for Assessing and Visualizing Temporal Clustering in Genealogies Inferred from Serially Sampled Viral Sequences [0.03%]
基于连续采样病毒序列的谱系推断的 PhyloTempo：用于评估和可视化基因谱系中时间聚类的一组R脚本
Melissa M Norström,Mattia C F Prosperi,Rebecca R Gray et al.
Melissa M Norström et al.
Serially-sampled nucleotide sequences can be used to infer demographic history of evolving viral populations. The shape of a phylogenetic tree often reflects the interplay between evolutionary and ecological processes. Several approaches ex...
Mitochondrial Genetic Differentiation of Spirlin (Actinopterigii: Cyprinidae) in the South Caspian Sea basin of Iran [0.03%]
伊朗里海南部流域Spirlin（辐鳍鱼纲、鲤科）线粒体遗传分化
Mahvash Seifali,Aziz Arshad,Faezeh Yazdani Moghaddam et al.
Mahvash Seifali et al.
Background: Knowledge about Alburnoides remains lacking relative to many other species, resulting in a lack of a systematic position and taxonomic diagnosis. Basic biological information for Alburnoides has been construct...
Impact of the partitioning scheme on divergence times inferred from Mammalian genomic data sets [0.03%]
分区方案对从哺乳动物基因组数据集中推断分化时间的影响
Carolina M Voloch,Carlos G Schrago
Carolina M Voloch
Data partitioning has long been regarded as an important parameter for phylogenetic inference. The division of heterogeneous multigene data sets into partitions with similar substitution patterns is known to increase the performance of prob...