Genome-wide survey of ds exonization to enrich transcriptomes and proteomes in plants [0.03%]
植物中ds外显子化 genomewide 调查以丰富转录组和蛋白质组
Li-Yu Daisy Liu,Yuh-Chyang Charng
Li-Yu Daisy Liu
Insertion of transposable elements (TEs) into introns can lead to their activation as alternatively spliced cassette exons, an event called exonization which can enrich the complexity of transcriptomes and proteomes. Previously, we performe...
Translation Efficiency in Upstream Region of microRNA Targets in Arabidopsis thaliana [0.03%]
拟南芥中microRNA靶基因上游区域的翻译效率研究
Wanjun Gu,Chuanying Zhai,Xiaofei Wang et al.
Wanjun Gu et al.
With respect to upstream regions of microRNA (miRNA) target sites located in protein coding sequences, experimental studies have suggested rare codons, rather than frequent codons, are important for miRNA function, because they slow down th...
Phylogenomic study of lipid genes involved in microalgal biofuel production-candidate gene mining and metabolic pathway analyses [0.03%]
脂质基因的系统基因组学研究——微藻生物柴油生产的候选基因挖掘及代谢途径分析
Namrata Misra,Prasanna Kumar Panda,Bikram Kumar Parida et al.
Namrata Misra et al.
Optimizing microalgal biofuel production using metabolic engineering tools requires an in-depth understanding of the structure-function relationship of genes involved in lipid biosynthetic pathway. In the present study, genome-wide identifi...
Evolution of Type II Antifreeze Protein Genes in Teleost Fish: A Complex Scenario Involving Lateral Gene Transfers and Episodic Directional Selection [0.03%]
辐鳍鱼类冰冻蛋白II型基因的进化：涉及横向基因转移和定向选择的复杂情形
Ulf Sorhannus
Ulf Sorhannus
I examined hypotheses about lateral transfer of type II antifreeze protein (AFP) genes among "distantly" related teleost fish. The effects of episodic directional selection on amino acid evolution were also investigated. The strict consensu...
Cloud computing for comparative genomics with windows azure platform [0.03%]
基于Windows Azure平台的比较基因组学云计算技术
Insik Kim,Jae-Yoon Jung,Todd F Deluca et al.
Insik Kim et al.
Cloud computing services have emerged as a cost-effective alternative for cluster systems as the number of genomes and required computation power to analyze them increased in recent years. Here we introduce the Microsoft Azure platform with...
Efficiency of nuclear and mitochondrial markers recovering and supporting known amniote groups [0.03%]
核基因和线粒体基因重建和支撑已知羊膜动物组的效率
Julia Lambret-Frotté,Fernando Araújo Perini,Claudia Augusta de Moraes Russo
Julia Lambret-Frotté
We have analysed the efficiency of all mitochondrial protein coding genes and six nuclear markers (Adora3, Adrb2, Bdnf, Irbp, Rag2 and Vwf) in reconstructing and statistically supporting known amniote groups (murines, rodents, primates, eut...
Inference of self-regulated transcriptional networks by comparative genomics [0.03%]
通过比较基因组学推断自我调节的转录网络
Joseph P Cornish,Fialelei Matthews,Julien R Thomas et al.
Joseph P Cornish et al.
The assumption of basic properties, like self-regulation, in simple transcriptional regulatory networks can be exploited to infer regulatory motifs from the growing amounts of genomic and meta-genomic data. These motifs can in principle be ...
Meta-analysis of general bacterial subclades in whole-genome phylogenies using tree topology profiling [0.03%]
基于树形拓扑特征分析基因组系统发生树中的大肠杆菌亚菌株
Thomas Meinel,Antje Krause
Thomas Meinel
In the last two decades, a large number of whole-genome phylogenies have been inferred to reconstruct the Tree of Life (ToL). Underlying data models range from gene or functionality content in species to phylogenetic gene family trees and m...
Anthony Levasseur,Julien Paganini,Jacques Dainat et al.
Anthony Levasseur et al.
The chordate proteome history database (http://ioda.univ-provence.fr) comprises some 20,000 evolutionary analyses of proteins from chordate species. Our main objective was to characterize and study the evolutionary histories of the chordate...
Reliable Phylogenetic Trees Building: A New Web Interface for FIGENIX [0.03%]
可靠的系统发育树构建：FIGENIX的新网络界面
Julien Paganini,Philippe Gouret
Julien Paganini
The community needed a reliable and user friendly tool to quickly produce robust phylogenetic trees which are crucial in evolutionary studies and genomes' functional annotation. FIGENIX is software dedicated to this and was published in 200...