Netmes: assessing gene network inference algorithms by network-based measures [0.03%]
基于网络的度量在基因网络推断算法中的评估作用
Gökmen Altay,Zeyneb Kurt,Matthias Dehmer et al.
Gökmen Altay et al.
Gene regulatory network inference (GRNI) algorithms are essential for efficiently utilizing large-scale microarray datasets to elucidate biochemical interactions among molecules in a cell. Recently, the combination of network-based error me...
Approximate Likelihood Estimation of Divergence Time Range Using a Coalescent-based Model [0.03%]
基于谱系树的分裂时间范围的大致概率估计方法研究
Arindam Roychoudhury
Arindam Roychoudhury
We present an estimation of divergence time-range based on a coalescent model. This model sum the probability of coalescent trees, taking into account the effect of incomplete lineage sorting. Maximum likelihood estimate based on this model...
Athanasia Pavlopoulou,Dimitrios Vlachakis,Nikolaos A A Balatsos et al.
Athanasia Pavlopoulou et al.
Deadenylases catalyze the shortening of the poly(A) tail at the messenger ribonucleic acid (mRNA) 3'-end in eukaryotes. Therefore, these enzymes influence mRNA decay, and constitute a major emerging group of promising anti-cancer pharmacolo...
Emanuel Maldonado,Imran Khan,Siby Philip et al.
Emanuel Maldonado et al.
The rapid advances in genome sequencing technologies have increased the pace at which biological sequence databases are becoming available to the broad scientific community. Thus, obtaining and preparing an appropriate sequence dataset is a...
Computational Identification of MicroRNAs from the Expressed Sequence Tags of Toxic Dinoflagellate Alexandrium Tamarense [0.03%]
毒藻Alexandrium tamarense表达序列标签中的微小RNA的计算识别方法研究
Dahai Gao,Limei Qiu,Zhanhui Hou et al.
Dahai Gao et al.
Micro ribonucleic acids (miRNAs) represent a class of small noncoding RNAs that play important roles in multiple biological processes by degrading targeted mRNAs or by repressing mRNA translation. In the case of algal lineages, especially d...
Grouped False-Discovery Rate for Removing the Gene-Set-Level Bias of RNA-seq [0.03%]
分组假发现率：去除RNA测序基因集合偏差的方法
Tae Young Yang,Seongmun Jeong
Tae Young Yang
In recent years, RNA-seq has become a very competitive alternative to microarrays. In RNA-seq experiments, the expected read count for a gene is proportional to its expression level multiplied by its transcript length. Even when two genes a...
The origin of parasitism gene in nematodes: evolutionary analysis through the construction of domain trees [0.03%]
线虫寄生基因的起源—通过结构域树的构建进行进化分析
Yizi Yang,Damin Luo
Yizi Yang
Inferring evolutionary history of parasitism genes is important to understand how evolutionary mechanisms affect the occurrences of parasitism genes. In this study, we constructed multiple domain trees for parasitism genes and genes under f...
Identification of new aquaporin genes and single nucleotide polymorphism in bread wheat [0.03%]
新的水通道蛋白基因及普通小麦中的单核苷酸多态性识别
B Pandey,P Sharma,D M Pandey et al.
B Pandey et al.
Major facilitators of water movement through plant cell membranes include aquaporin proteins. Wheat is among the largest and most important cereal crops worldwide; however, unlike other model plants such as rice, maize and Arabidopsis, litt...
PhyloTreePruner: A Phylogenetic Tree-Based Approach for Selection of Orthologous Sequences for Phylogenomics [0.03%]
基于系统发育树的直系同源序列选择方法PHYLOTREEPRUNER及其应用
Kevin M Kocot,Mathew R Citarella,Leonid L Moroz et al.
Kevin M Kocot et al.
Molecular phylogenetics relies on accurate identification of orthologous sequences among the taxa of interest. Most orthology inference programs available for use in phylogenomics rely on small sets of pre-defined orthologs from model organ...
Prediction of protein essentiality by the support vector machine with statistical tests [0.03%]
基于统计检验的支持向量机的蛋白质功能元件预测方法
Chiou-Yi Hor,Chang-Biau Yang,Zih-Jie Yang et al.
Chiou-Yi Hor et al.
Essential proteins include the minimum required set of proteins to support cell life. Identifying essential proteins is important for understanding the cellular processes of an organism. However, identifying essential proteins experimentall...