Phylogenomics and genome size evolution in Amomum s. s. (Zingiberaceae): Comparison of traditional and modern sequencing methods [0.03%]
Amomum s. s. (姜科)的系统基因组学与基因组大小进化：传统和现代测序方法的比较
Kristýna Hlavatá,Jana Leong-Škorničková,Eliška Záveská et al.
Kristýna Hlavatá et al.
Background and aims: A targeted enrichment NGS approach was used to construct the phylogeny of Amomum Roxb. (Zingiberaceae). Phylogenies based on hundreds of nuclear genes, the whole plastome and the rDNA cistron were com...
Addressing inconsistencies in Cyperaceae and Juncaceae taxonomy: Comment on Brožová et al. (2022) [0.03%]
解决莎草科和石南科分类学中的不一致问题：对Brožová等人（2022年）的评论
Tammy L Elliott,Isabel Larridon,Russell L Barrett et al.
Tammy L Elliott et al.
KINN: An alignment-free accurate phylogeny reconstruction method based on inner distance distributions of k-mer pairs in biological sequences [0.03%]
KINN：一种基于生物序列中k-mer对内部距离分布的无比对精确系统发生重建方法
Runbin Tang,Zuguo Yu,Jinyan Li
Runbin Tang
Alignment-based methods have faced disadvantages in sequence comparison and phylogeny reconstruction due to their high computational complexity. Alignment-free methods for sequence comparison and phylogeny inference have attracted a great d...
Comparative genomics and informational content analysis uncovered internal regions of the core genes rpoD, pepN and gltX for an MLSA with genome-level resolving power within the genus Pseudomonas [0.03%]
比较基因组和信息内容分析揭示了假单胞菌属内具有基因组水平解析能力的MLSA核心基因rpoD，pepN和gltX的内部区域
Matías Garavaglia,Andrés Muzlera,Claudio Valverde
Matías Garavaglia
In the field of prokaryotic taxonomy, there has been a recent transition towards phylogenomics as the gold standard approach. However, genome-based phylogenetics is still restrictive for its cost when managing large amounts of isolates. Fas...
Evaluating a species phylogeny using ddRAD SNPs: Cyto-nuclear discordance and introgression in the salmonid genus Thymallus (Salmonidae) [0.03%]
使用ddRAD SNP评估物种系统发育：鲑科鱼属Thymallus的细胞核不一致性和渐渗杂交
Giulia Secci-Petretto,Gernot K Englmaier,Steven J Weiss et al.
Giulia Secci-Petretto et al.
Hybridization and introgression are very common among freshwater fishes due to the dynamic nature of hydrological landscapes. Cyclic patterns of allopatry and secondary contact provide numerous opportunities for interspecific gene flow, whi...
A near-complete species-level phylogeny of uropeltid snakes harnessing historical museum collections as a DNA source [0.03%]
综合利用历史博物馆馆藏构建盾首蛇科系统发育树
Filipa L Sampaio,Julia J Day,L J Mendis Wickramasinghe et al.
Filipa L Sampaio et al.
Uropeltidae is a clade of small fossorial snakes (ca. 64 extant species) endemic to peninsular India and Sri Lanka. Uropeltid taxonomy has been confusing, and the status of some species has not been revised for over a century. Attempts to r...
Emmanuel Paradis,Santiago Claramunt,Joseph Brown et al.
Emmanuel Paradis et al.
Molecular dating has been widely used to infer the times of past evolutionary events using molecular sequences. This paper describes three bootstrap methods to infer confidence intervals under a penalized likelihood framework. The basic ide...
Phylogenetic relationships and species delimitation in Haemopis (Annelida: Hirudinea: Haemopidae) [0.03%]
Haemopis（环节动物门：蛭纲：毛细血蛭科）的系统发育关系及其物种界定研究
Sebastian Kvist,Ismay Earl,Ester Kink et al.
Sebastian Kvist et al.
The Holarctic leech genus Haemopis currently includes 11 species, all of which are macrophagous, as opposed to their more infamous bloodfeeding counterparts among hirudiniform leeches. In spite of their ecological importance as fish food an...
Phylotranscriptomics interrogation uncovers a complex evolutionary history for the planarian genus Dugesia (Platyhelminthes, Tricladida) in the Western Mediterranean [0.03%]
表观转录组分析揭示了西方地中海杜杰氏扁虫属（Dugesia）（无体腔动物，Tricladida）复杂的进化历史
Lisandra Benítez-Álvarez,Laia Leria,Rosa Fernández et al.
Lisandra Benítez-Álvarez et al.
The Mediterranean is one of the most biodiverse areas of the Paleartic region. Here, basing on large data sets of single copy orthologs obtained from transcriptomic data, we investigated the evolutionary history of the genus Dugesia in the ...
Too early for the ferry: The biogeographic history of the Assamiidae of southeast Asia (Chelicerata: Opiliones, Laniatores) [0.03%]
天刚亮的渡轮：东南亚Assamiidae亚科的生物地理历史（节肢动物门：Opiliones，Laniatores）
Luciano Palmieri,Gonzalo Giribet,Prashant P Sharma
Luciano Palmieri
Opiliones (harvestmen) have come to be regarded as an abundant source of model groups for study of historical biogeography, due to their ancient age, poor dispersal capability, and high fidelity to biogeographic terranes. One of the least u...