A comprehensive workflow for resolving Gryllidea phylogeny using universal single-copy orthologs [0.03%]
基于单拷贝直系同源基因的叩甲总科系统发育关系研究的全面工作流分析项目
Yan-Na Zheng,Li-Bin Ma,Yuan Huang
Yan-Na Zheng
The Gryllidea exhibits remarkable species diversity, yet the higher-level phylogenetic relationships have long been contentious. This study aims to develop and validate a reproducible phylogenetic analysis workflow using Universal Single-Co...
The origin of cichlids: The controversial phylogenomics of the convict fish, Pholidichthys leucotaenia [0.03%]
慈鲷科鱼类的起源：非洲 convict 斗鱼 Pholidichthys leucotaenia 的争议性系统基因组学地位
Eric Witte,Shinji Yamamoto,Allyson Salazar-Sawkins et al.
Eric Witte et al.
Cichlids (family Cichlidae) are a highly diverse group of freshwater fishes that have served as key models in evolutionary biology. A contentious hypothesis based on molecular data suggested that the convict fish, Pholidichthys, a marine fi...
Efficient identification of phylogenetically informative alignment sites via sparse learning [0.03%]
基于稀疏学习的高效鉴定系统发育信息位点的方法
Carlos G Schrago
Carlos G Schrago
Identifying phylogenetically informative sites in multiple sequence alignments is critical for accurate tree reconstruction and efficient data curation in phylogenomics. Existing approaches that measure phylogenetic information often rely o...
Phylogenomics of the woodland salamanders (Plethodon): Reticulate evolution and indistinct species boundaries [0.03%]
木林子红点鲑（Plethodon）的系基因组学：网络进化与模糊物种界限
Brian P Waldron,Maggie M Hantak,Emily F Watts et al.
Brian P Waldron et al.
Rapid species formation, cryptic species, and interspecific hybridization present serious analytical challenges for systematists, yet are important processes in the diversification of many taxa. We estimated the phylogenomic history of the ...
Phylogenomic species delimitation reveals distinct pace and mode of lineage evolution in Amanita jacksonii [0.03%]
基于系统基因组的物种划分揭示了Jackson氏臭鹅膏中不同的进化速率和模式
Santiago Sánchez-Ramírez,Rodham E Tulloss,Simona Margaritescu et al.
Santiago Sánchez-Ramírez et al.
Amanita jacksonii s.l. represents a challenging case of species delimitation in mushroom-forming fungi, where traditional morphological characters and standard molecular markers have proven insufficient for clear taxonomic resolution. Using...
Space explorer: floral evolution and lineage diversification of the Neotropical Sapranthinae clade (Annonaceae) [0.03%]
花的演化和新热带Sapranthinae类群（肉豆蔻科）谱系分化探索
María Fernanda Martínez-Velarde,Francis J Nge,Carlos Rodrigues-Vaz et al.
María Fernanda Martínez-Velarde et al.
Floral morphology influences angiosperm diversification, yet many lineages maintain ancestral traits due to selection pressures. Although ecological speciation can generate novel floral morphologies, such innovations rarely become widesprea...
Phylogenetic analysis of Batrachospermaceae (Batrachospermales, Rhodophyta) based on plastid and mitochondrial genomes, with the description of two new species of different genera [0.03%]
基于叶绿体和线粒体基因组的轮藻目（Rhodophyta）轮藻科的系统发育分析及新属两种新物种的描述
Weinan Guo,Fangru Nan,Xudong Liu et al.
Weinan Guo et al.
This study reconstructed the phylogeny of Batrachospermaceae using published chloroplast and mitochondrial genome data, and conducted comparative analyses with phylogenetic trees constructed from multiple genes (rbcL, COI, rbcL + COI, psaA ...
Phylogenomics of Rhinogobius gobies reveal northern-southern divergence and trait evolution in China [0.03%]
基于遗传组学的拟沙蚕鱼属鱼类在中国南北分化及性状演化研究
Suhan Liu,Qinwen Xue,Yun Hu et al.
Suhan Liu et al.
The goby genus Rhinogobius represents a prominent radiation of freshwater fishes in East Asia, with China serving as its evolutionary hotspot harboring over 39 endemic species. Despite their ecological dominance in riverine ecosystems, phyl...
Phylogenomics, domestication history, and conservation insights for a neglected and underutilized crop: Sechium edule ssp. edule (Cucurbitaceae) and its wild relatives [0.03%]
基于系统基因组学的作物驯化历史和遗传多样性研究——以食用瘤玉瓜（Sechium edule）及其近缘种为例
Cécile Truchot-Taillefer,Erika Aguirre-Planter,Jaime Gasca-Pineda et al.
Cécile Truchot-Taillefer et al.
Understanding evolutionary relationships in domesticated crops and their wild relatives is often challenging because of their recent divergence, and still ongoing interspecific gene flow. These processes blur species boundaries and complica...
Employing exon capture to resolve species-level relationships in Australian Arid Zone camaenid land snails [0.03%]
利用外显子捕获法解析澳洲干旱区卡梅尼德陆生蜗牛物种间关系
Björn Stelbrink,Luisa Teasdale,Francesco Criscione et al.
Björn Stelbrink et al.
Exon capture has emerged as a powerful and relatively cost-effective method for obtaining independently evolving nuclear loci, enabling robust phylogenetic inference across diverse taxonomic levels. While most exon capture studies have focu...