Comparison of paralog identification methods and their impact on species tree topologies in target capture phylogenomics within the Sindora clade (Detarioideae: Leguminosae) [0.03%]
目标捕获泛基因组学中辛多拉系四角豆属的直系同源与旁系同源鉴别方法比较及其对系统发生树拓扑结构的影响
Le Min Choo,Manuel de la Estrella,Rowan J Schley et al.
Le Min Choo et al.
Target capture is a common method of generating high throughput DNA sequencing data for phylogenetic reconstruction of species relationships, for which single copy genes are usually most informative. However, a pervasive problem with target...
Introgression shapes the genomic conflict landscape of Malus, providing evidence for a reticulate backbone in a woody crop lineage [0.03%]
基因渗入塑造了苹果属的基因组冲突景观，为木本作物谱系中的网状进化提供证据
Xiao-Ya Li,Zhao-Qian Niu,Ya-Wen Zheng et al.
Xiao-Ya Li et al.
Phylogenomic discordance is widespread across plants, but its evolutionary significance is often obscured when conflict is treated primarily as analytical noise rather than as evidence of underlying processes. In woody lineages in particula...
Christophe J Praz,Morgan Gueuning,Michael G Branstetter et al.
Christophe J Praz et al.
The generic-level classification of the bee tribe Megachilini (Megachilidae) has remained controversial due to poor phylogenetic resolution at the base of the group, particularly among the brood parasitic genera and the numerous dauber ("Ch...
Diversity and population connectivity of members of the family eunicidae inhabiting deep-water corals in the North Atlantic [0.03%]
北大西洋深水珊瑚丛住栖的 Families Eunicidae 的种类多样性及种群连接性研究
Carlota Gracia-Sancha,Nicolai Roterman,Michelle L Taylor et al.
Carlota Gracia-Sancha et al.
Eunicid polychaetes are often found in association with Cold Water Corals (CWCs), even establishing symbiotic relationships, such as those described between Desmophyllum pertusum and Eunice norvegica. While genetic connectivity of CWCs acro...
Unexpected diversity of Isidoides (Anthozoa: Octocorallia: Isidoidae) revealed by morphology and phylogenomic analysis with descriptions of three new species [0.03%]
形态和系统发育基因组分析揭示的Isidoides（八腕珊瑚：Isidoidae）意外多样性及其三个新物种的描述
Yu Xu,Jaret P Bilewitch,Eric Pante et al.
Yu Xu et al.
Isidoidae Heestand Saucier, France & Watling, 2021 is a rare octocoral family currently represented by a single genus and species, Isidoides armata Nutting, 1910 recorded in the western Pacific Ocean. The taxonomic status and diversity of I...
Phylogenomics and morphological evidence reveal a new genus Callibractia gen. Nov. (Apiaceae, Apioideae), a distinct alpine lineage of Sino-Himalaya shaped by uplift of the Pan-Tibetan Highlands [0.03%]
基于基因组和形态证据发现的芹亚科新属Callibractia（伞形科）：青藏高原隆升驱动下形成的独特的横断山高山谱系
Zi-Xuan Li,Chang Peng,Xing-Jin He et al.
Zi-Xuan Li et al.
Since the circumscription of Pleurospermum sensu stricto, the taxonomic status of the remaining Pleurospermum sensu lato species has remained unresolved. Our phylogenomic analyses using plastome (150 sequences), nrDNA (156), and nrITS (244)...
Moderate introgression in a single individual genome is sufficient to mislead phylogenomic inference of Triplophysa [0.03%]
单个个体基因组中的中度渐渗会对Triplophysa的系统基因组学推断造成误导
Zitu Ma,He Gao,Chuanshuai Xie et al.
Zitu Ma et al.
Resolving species relationships in rapidly radiating lineages remains a major challenge in evolutionary biology, particularly when hybridization obscures phylogenetic signals. Here, we present a chromosome-level, haplotype-resolved genome a...
Phylogenomics reveal extensive phylogenetic discordances in Diospyros (Ebenaceae) of China [0.03%]
基于基因组数据的中国梾木属(Diospyros，杜鹃花目)系统发育关系研究及类群划分
Chunyu Zou,Pengpeng Yan,Yusong Huang et al.
Chunyu Zou et al.
The pantropical genus Diospyros L. (Ebenaceae) includes many economically valuable species prized for ebony timber and edible fruits. However, its high species diversity and morphological similarity pose significant challenges for understan...
A deceitful claw: Erection of Synonyx gen. Nov. and Synonyxidae fam. Nov. in Hypsibioidea (Eutardigrada: Parachela) [0.03%]
狡诈的爪子：Hypsibioidea 目中 Synonyx 新属和 Synonyxidae 新科（缓壁纤恙蛛动物亚界：缓壁纤恙蛛总纲）
Pritam K Dey,Napat Emdee,Piotr Gąsiorek et al.
Pritam K Dey et al.
Claws are strongly sclerotised elements of tardigrade exoskeleton of a great phylogenetic and taxonomic importance. Although several general claw curvatures and anatomies can be distinguished within Eutardigrada, some more subtle difference...
Genome-based phylogeography of the red bamboo ratsnake Oreocryptophis porphyraceus (Serpentes: Colubridae) [0.03%]
基于基因组的红竹鼠蛇（游蛇科）谱系地理学研究
Qin Liu,Ping Wang,Bing Lyu et al.
Qin Liu et al.
Speciation is often considered as a prolonged, continuous and complex process shaped by interactions among multiple evolutionary forces, including both biotic and abiotic factors. Robust species delimitation is fundamental for understanding...