Generating single-cell gene expression profiles for high-resolution spatial transcriptomics based on cell boundary images [0.03%]
基于细胞边界图像生成单细胞基因表达谱以实现高分辨率空间转录组学
Bohan Zhang,Mei Li,Qiang Kang et al.
Bohan Zhang et al.
In spatially resolved transcriptomics, Stereo-seq facilitates the analysis of large tissues at the single-cell level, offering subcellular resolution and centimeter-level field-of-view. Our previous work on StereoCell introduced a one-stop ...
BatchEval Pipeline: batch effect evaluation workflow for multiple datasets joint analysis [0.03%]
批量评估管道：用于多个数据集联合分析的批次效应评估工作流
Chao Zhang,Qiang Kang,Mei Li et al.
Chao Zhang et al.
As genomic sequencing technology continues to advance, it becomes increasingly important to perform joint analyses of multiple datasets of transcriptomics. However, batch effect presents challenges for dataset integration, such as sequencin...
SAW: an efficient and accurate data analysis workflow for Stereo-seq spatial transcriptomics [0.03%]
SAW：Stereo-seq空间转录组数据的有效且准确分析工作流程
Chun Gong,Shengkang Li,Leying Wang et al.
Chun Gong et al.
The basic analysis steps of spatial transcriptomics require obtaining gene expression information from both space and cells. The existing tools for these analyses incur performance issues when dealing with large datasets. These issues invol...
Citizen science data on urban forageable plants: a case study in Brazil [0.03%]
城市可采集植物的公民科学数据：一个在巴西的案例研究
Filipi Miranda Soares,Luís Ferreira Pires,Maria Carolina Garcia et al.
Filipi Miranda Soares et al.
This paper presents two key data sets derived from the Pomar Urbano project. The first data set is a comprehensive catalog of edible fruit-bearing plant species, native or introduced to Brazil. The second data set, sourced from the iNatural...
The genome assembly and annotation of the white-lipped tree pit viper Trimeresurus albolabris [0.03%]
白唇树蜥 (Trimeresurus albolabris) 基因组组装与注释
Xiaotong Niu,Yakui Lv,Jin Chen et al.
Xiaotong Niu et al.
Trimeresurus albolabris, also known as the white-lipped pit viper or white-lipped tree viper, is a highly venomous snake distributed across Southeast Asia and the cause of many snakebite cases. In this study, we report the first whole genom...
Near chromosome-level and highly repetitive genome assembly of the snake pipefish Entelurus aequoreus (Syngnathiformes: Syngnathidae) [0.03%]
团扇海龙（Entelurus aequoreus （Syngnathiformes: Syngnathidae））近染色体水平的高重复序列基因组组装
Magnus Wolf,Bruno Lopes da Silva Ferrette,Raphael T F Coimbra et al.
Magnus Wolf et al.
The snake pipefish, Entelurus aequoreus (Linnaeus, 1758), is a northern Atlantic fish inhabiting open seagrass environments that recently expanded its distribution range. Here, we present a highly contiguous, near chromosome-scale genome of...
Species composition and distribution of the Anopheles gambiae complex circulating in Kinshasa [0.03%]
在金沙萨循环的按蚊属复种群的物种组成和分布情况
Josue Zanga,Emery Metelo,Nono Mvuama et al.
Josue Zanga et al.
Understanding the distribution of Anopheles species is essential for planning and implementing malaria control programmes. This study assessed the composition and distribution of cryptic species of the main malaria vector, the Anopheles gam...
Nanopore adaptive sampling enriches for antimicrobial resistance genes in microbial communities [0.03%]
纳米孔自适应采样富集微生物群落中的抗微生物药物耐药基因
Danielle C Wrenn,Devin M Drown
Danielle C Wrenn
Antimicrobial resistance (AMR) is a global public health threat. Environmental microbial communities act as reservoirs for AMR, containing genes associated with resistance, their precursors, and the selective pressures promoting their persi...
Sampling collections and metadata of planorbidae (Mollusca: Gastropoda) in Brazil: a comprehensive analysis of the Oswaldo Cruz Institute's Mollusk Collection from 1948 to 2023 [0.03%]
巴西肺螺科软体动物及其数据库的取样和元数据整合：1948年至2023年奥斯瓦尔多克鲁兹研究所软体动物收藏的全面分析
Silvana Carvalho Thiengo,Mariana Gomes Lima,Alexandre Bonfim Pinheiro da Silva et al.
Silvana Carvalho Thiengo et al.
Planorbidae comprises approximately 40 genera of freshwater gastropods, including roughly 250 species. Among the Planorbidae subfamilies, the significance of Planorbinae is due to its genus Biomphalaria, whose species are intermediate hosts...
Genome assembly and annotation of the king ratsnake, Elaphe carinata [0.03%]
帝王鼠蛇（Elaphe carinata）基因组的组装与注释
Jiale Fan,Ruyi Huang,Diancheng Yang et al.
Jiale Fan et al.
The king ratsnake (Elaphe carinata) of the genus Elaphe is a common large, non-venomous snake widely distributed in Southeast and East Asia. It is an economically important farmed species. As a non-venomous snake, the king ratsnake predates...