Chromosome-level genome assembly and annotation of the crested gecko, Correlophus ciliatus, a lizard incapable of tail regeneration [0.03%]
不能再生尾巴的 Crested Gecko（Correlophus ciliatus）染色体水平基因组组装与注释
Marc A Gumangan,Zheyu Pan,Thomas P Lozito
Marc A Gumangan
The vast majority of gecko species are capable of tail regeneration, but singular geckos of Correlophus, Uroplatus, and Nephrurus genera are unable to regrow lost tails. Of these non-regenerative geckos, the crested gecko (Correlophus cilia...
SMARTER-database: a tool to integrate SNP array datasets for sheep and goat breeds [0.03%]
SMARTER-数据库：整合山羊和绵羊品种的SNP阵列数据集工具
Paolo Cozzi,Arianna Manunza,Johanna Ramirez-Diaz et al.
Paolo Cozzi et al.
Underutilized sheep and goat breeds can adapt to challenging environments due to their genetics. Integrating publicly available genomic datasets with new data will facilitate genetic diversity analyses; however, this process is complicated ...
Building a community-driven bioinformatics platform to facilitate Cannabis sativa multi-omics research [0.03%]
建立一个社区驱动的生物信息学平台以促进大麻多组学研究
Locedie Mansueto,Tobias Kretzschmar,Ramil Mauleon et al.
Locedie Mansueto et al.
Global changes in cannabis legislation after decades of stringent regulation and heightened demand for its industrial and medicinal applications have spurred recent genetic and genomics research. An international research community emerged ...
PhysiMeSS - a new physiCell addon for extracellular matrix modelling [0.03%]
PhysiMeSS-一个新的用于细胞外基质建模的physicell插件
Vincent Noël,Marco Ruscone,Robyn Shuttleworth et al.
Vincent Noël et al.
The extracellular matrix, composed of macromolecules like collagen fibres, provides structural support to cells and acts as a barrier that metastatic cells degrade to spread beyond the primary tumour. While agent-based frameworks, such as P...
NucBalancer: streamlining barcode sequence selection for optimal sample pooling for sequencing [0.03%]
NucBalancer：优化样本池测序的条形码序列选择以提高效率
Saurabh Gupta,Ankur Sharma
Saurabh Gupta
Recent advancements in next-generation sequencing (NGS) technologies have brought to the forefront the necessity for versatile, cost-effective tools capable of adapting to a rapidly evolving landscape. The emergence of numerous new sequenci...
CannSeek? Yes we Can! An open-source single nucleotide polymorphism database and analysis portal for Cannabis sativa [0.03%]
Canseeker？我们可以！一个大麻（Cannabis sativa）的开放单核苷酸多态性数据库和分析入口网站
Locedie Mansueto,Kenneth L McNally,Tobias Kretzschmar et al.
Locedie Mansueto et al.
A growing interest in Cannabis sativa uses for food, fiber, and medicine, and recent changes in regulations have spurred numerous genomic studies of this once-prohibited plant. Cannabis research uses Next Generation Sequencing technologies ...
RiboSnake - a user-friendly, robust, reproducible, multipurpose and documentation-extensive pipeline for 16S rRNA gene microbiome analysis [0.03%]
RiboSnake：一种用户友好型、稳健性好、可重复验证的多用途和详尽文档说明的16S rRNA基因微生物组分析流程管道
Ann-Kathrin Dörr,Josefa Welling,Adrian Dörr et al.
Ann-Kathrin Dörr et al.
Background: Next-generation sequencing for microbial communities has become a standard technique. However, the computational analysis remains resource-intensive. With declining costs and growing adoption of sequencing-bas...
High-speed whole-genome sequencing of a Whippet: Rapid chromosome-level assembly and annotation of an extremely fast dog's genome [0.03%]
高速全基因组测序微型雪达犬：快速的染色体水平组装和注释了一种非常快的狗的基因组
Marcel Nebenführ,David Prochotta,Alexander Ben Hamadou et al.
Marcel Nebenführ et al.
The time required for genome sequencing and de novo assembly depends on the interaction between laboratory work, sequencing capacity, and the bioinformatics workflow, often constrained by external sequencing services. Bringing together acad...
Jorge Buenabad-Chavez,Evelyn Greeves,James P J Chong et al.
Jorge Buenabad-Chavez et al.
Amazon Web Services (AWS) instances provide a convenient way to run training on complex 'omics data analysis workflows without requiring participants to install software packages or store large data volumes locally. However, efficiently man...
Kinship analysis and pedigree reconstruction by RAD sequencing in cattle [0.03%]
利用RAD测序技术分析奶牛的亲缘关系及谱系重建
Yiming Xu,Wanqiu Wang,Jiefeng Huang et al.
Yiming Xu et al.
Kinship and pedigree, used for estimating inbreeding, heritability, selection, and gene flow, are useful for breeding and animal conservation. However, as the size of crossbred populations increases, inaccurate generation and parentage assi...