NucBalancer: streamlining barcode sequence selection for optimal sample pooling for sequencing [0.03%]
NucBalancer：优化样本池测序的条形码序列选择以提高效率
Saurabh Gupta,Ankur Sharma
Saurabh Gupta
Recent advancements in next-generation sequencing (NGS) technologies have brought to the forefront the necessity for versatile, cost-effective tools capable of adapting to a rapidly evolving landscape. The emergence of numerous new sequenci...
CannSeek? Yes we Can! An open-source single nucleotide polymorphism database and analysis portal for Cannabis sativa [0.03%]
Canseeker？我们可以！一个大麻（Cannabis sativa）的开放单核苷酸多态性数据库和分析入口网站
Locedie Mansueto,Kenneth L McNally,Tobias Kretzschmar et al.
Locedie Mansueto et al.
A growing interest in Cannabis sativa uses for food, fiber, and medicine, and recent changes in regulations have spurred numerous genomic studies of this once-prohibited plant. Cannabis research uses Next Generation Sequencing technologies ...
RiboSnake - a user-friendly, robust, reproducible, multipurpose and documentation-extensive pipeline for 16S rRNA gene microbiome analysis [0.03%]
RiboSnake：一种用户友好型、稳健性好、可重复验证的多用途和详尽文档说明的16S rRNA基因微生物组分析流程管道
Ann-Kathrin Dörr,Josefa Welling,Adrian Dörr et al.
Ann-Kathrin Dörr et al.
Background: Next-generation sequencing for microbial communities has become a standard technique. However, the computational analysis remains resource-intensive. With declining costs and growing adoption of sequencing-bas...
High-speed whole-genome sequencing of a Whippet: Rapid chromosome-level assembly and annotation of an extremely fast dog's genome [0.03%]
高速全基因组测序微型雪达犬：快速的染色体水平组装和注释了一种非常快的狗的基因组
Marcel Nebenführ,David Prochotta,Alexander Ben Hamadou et al.
Marcel Nebenführ et al.
The time required for genome sequencing and de novo assembly depends on the interaction between laboratory work, sequencing capacity, and the bioinformatics workflow, often constrained by external sequencing services. Bringing together acad...
Jorge Buenabad-Chavez,Evelyn Greeves,James P J Chong et al.
Jorge Buenabad-Chavez et al.
Amazon Web Services (AWS) instances provide a convenient way to run training on complex 'omics data analysis workflows without requiring participants to install software packages or store large data volumes locally. However, efficiently man...
Kinship analysis and pedigree reconstruction by RAD sequencing in cattle [0.03%]
利用RAD测序技术分析奶牛的亲缘关系及谱系重建
Yiming Xu,Wanqiu Wang,Jiefeng Huang et al.
Yiming Xu et al.
Kinship and pedigree, used for estimating inbreeding, heritability, selection, and gene flow, are useful for breeding and animal conservation. However, as the size of crossbred populations increases, inaccurate generation and parentage assi...
Chromosomal-level genome assembly and single-nucleotide polymorphism sites of black-faced spoonbill Platalea minor [0.03%]
黑脸琵鹭Platalea minor染色体水平基因组及单核苷酸多态位点识别
Hong Kong Biodiversity Genomics Consortium
Hong Kong Biodiversity Genomics Consortium
Platalea minor, or black-faced spoonbill (Threskiornithidae), is a wading bird confined to coastal areas in East Asia. Due to habitat destruction, it was classified as globally endangered by the International Union for Conservation of Natur...
Multicellular, IVT-derived, unmodified human transcriptome for nanopore-direct RNA analysis [0.03%]
适用于纳米孔测序的无扩增人类细胞 transcriptome 直接制备方法
Caroline A McCormick,Stuart Akeson,Sepideh Tavakoli et al.
Caroline A McCormick et al.
Nanopore direct RNA sequencing (DRS) enables measurements of RNA modifications. Modification-free transcripts are a practical and targeted control for DRS, providing a baseline measurement for canonical nucleotides within a matched and biol...
PhysiCell Studio: a graphical tool to make agent-based modeling more accessible [0.03%]
PhysiCell Studio：一种使基于代理的建模更易于访问的图形工具
Randy Heiland,Daniel Bergman,Blair Lyons et al.
Randy Heiland et al.
Defining a multicellular model can be challenging. There may be hundreds of parameters that specify the attributes and behaviors of objects. In the best case, the model will be defined using some format specification - a markup language - t...
Low-coverage whole genome sequencing for a highly selective cohort of severe COVID-19 patients [0.03%]
低覆盖率全基因组测序在重症新冠肺炎患者中的选择性应用
Renato Santos,Víctor Moreno-Torres,Ilduara Pintos et al.
Renato Santos et al.
Despite the advances in genetic marker identification associated with severe COVID-19, the full genetic characterisation of the disease remains elusive. This study explores imputation in low-coverage whole genome sequencing for a severe COV...