The assembly and annotation of two teinturier grapevine varieties, Dakapo and Rubired [0.03%]
两个着色葡萄品种Dakapo和Rubired的组装与注释
Eleanore J Ritter,Noé Cochetel,Andrea Minio et al.
Eleanore J Ritter et al.
Teinturier grapevines, known for their pigmented flesh berries due to anthocyanin production, are valuable for enhancing the pigmentation of wine, for potential health benefits, and for investigating anthocyanin production in plants. Here, ...
Draft genome of the endangered visayan spotted deer (Rusa alfredi), a Philippine endemic species [0.03%]
濒危的菲律宾特有种(visayan斑鹿(Rusa alfredi))基因草图
Ma Carmel F Javier,Albert C Noblezada,Persie Mark Q Sienes et al.
Ma Carmel F Javier et al.
The Visayan Spotted Deer (VSD), or Rusa alfredi, is an endangered and endemic species in the Philippines. Despite its status, genomic information on R. alfredi, and the genus Rusa in general, is missing. This study presents the first draft ...
SqueezeCall: nanopore basecalling using a Squeezeformer network [0.03%]
SqueezeCall：使用Squeezeformer网络进行纳米孔碱基识别
Zhongxu Zhu
Zhongxu Zhu
Nanopore sequencing, a third-generation sequencing technique, enables direct RNA sequencing, real-time analysis, and long-read length. Nanopore sequencers measure electrical current changes as nucleotides pass through nanopores; a basecalle...
A practical DNA data storage using an expanded alphabet introducing 5-methylcytosine [0.03%]
使用引入5-甲基胞嘧啶的扩展字母实现实用型DNA数据存储
Deruilin Liu,Demin Xu,Liuxin Shi et al.
Deruilin Liu et al.
The DNA molecule is a promising next-generation data storage medium. Recently, it has been theoretically proposed that non-natural or modified bases can serve as extra molecular letters to increase the information density. However, this str...
Biodepot Launcher: an app to install, manage and launch bioinformatics workflows [0.03%]
Biodepot Launcher：一款用于安装、管理和启动生物信息工作流的应用程序
Ling-Hong Hung,Thomas J Dahlstrom,Johnalbert Garnica et al.
Ling-Hong Hung et al.
We present the Biodepot Launcher, a desktop application that facilitates installation, management and deployment of bioinformatics workflows using the Biodepot-workflow-builder (Bwb). With the new app, Bwb can be started by double-clicking ...
The genome of the sapphire damselfish Chrysiptera cyanea: a new resource to support further investigation of the evolution of Pomacentrids [0.03%]
蓝宝石凤鳚（Chrysiptera cyanea）基因组：支持进一步研究 Pomacentrids 进化的新的资源
Emma Gairin,Saori Miura,Hiroki Takamiyagi et al.
Emma Gairin et al.
The number of high-quality genomes is rapidly increasing across taxa. However, it remains limited for coral reef fish of the Pomacentrid family, with most research focused on anemonefish. Here, we present the first assembly for a Pomacentri...
Aurélia Emonet,Mohamed Awad,Nikita Tikhomirov et al.
Aurélia Emonet et al.
Cardamine chenopodiifolia is an amphicarpic plant in the Brassicaceae family. Plants develop two fruit types, one above and another below ground. This rare trait is associated with octoploidy in C. chenopodiifolia. The absence of genomic da...
NeuroVar: an open-source tool for the visualization of gene expression and variation data for biomarkers of neurological diseases [0.03%]
神经疾病生物标志物的基因表达和变异数据可视化开源工具 NeuroVar
Hiba Ben Aribi,Najla Abassi,Olaitan I Awe
Hiba Ben Aribi
The expanding availability of large-scale genomic data and the growing interest in uncovering gene-disease associations call for efficient tools to visualize and evaluate gene expression and genetic variation data. Here, we developed a comp...
Whole-genome re-sequencing of the Baikal seal and other phocid seals for a glimpse into their genetic diversity, demographic history, and phylogeny [0.03%]
通过对贝加尔海豹和其他耳科海豹进行全基因组重测序以窥视其遗传多样性、种群历史和系统发生关系
Marcel Nebenführ,Ulfur Arnason,Axel Janke
Marcel Nebenführ
The Baikal seal (Pusa sibirica) is a freshwater seal endemic to Lake Baikal, where it became landlocked million years ago. It is an abundant species of least concern despite the limited habitat. Research on its genetic diversity had only be...
TSTA: thread and SIMD-based trapezoidal pairwise/multiple sequence-alignment method [0.03%]
基于线程和SIMD的梯形多序列比对方法
Peiyu Zong,Wenpeng Deng,Jian Liu et al.
Peiyu Zong et al.
The rapid advancements in sequencing length necessitate the adoption of increasingly efficient sequence alignment algorithms. The Needleman-Wunsch method introduces the foundational dynamic-programming matrix calculation for global alignmen...