Anita Graser,Tim Sutton,Marco Bernasocchi
Anita Graser
The QGIS project is a prominent open-source geographic information system (GIS) that has evolved over two decades, contributing significantly to the geospatial community. This paper presents the development, governance, and operational chal...
Bernd Bischl,Giuseppe Casalicchio,Taniya Das et al.
Bernd Bischl et al.
OpenML is an open-source platform that democratizes machine-learning evaluation by enabling anyone to share datasets in uniform standards, define precise machine-learning tasks, and automatically share detailed workflows and model evaluatio...
Bioconductor: Planning a third decade of comprehensive support for genomic data science [0.03%]
生物信息软件库Bioconductor的过去、现在和未来展望
Vincent J Carey
Vincent J Carey
This opinion piece discusses the Bioconductor project for open-source bioinformatics and the engineering concepts underlying its effectiveness to date. Since the inception of Bioconductor in 2002 with 15 software packages devoted to analysi...
A conversation with research software engineers at the International Brain Laboratory [0.03%]
国际脑实验室的研究软件工程师访谈
Mayo Faulkner,Miles Wells
Mayo Faulkner
Open-source software is the lifeblood of many modern research projects, allowing researchers to push boundaries, build collaborations, and work transparently. The International Brain Laboratory (IBL), a group of more than twenty labs workin...
ASReview LAB v.2: Open-source text screening with multiple agents and a crowd of experts [0.03%]
ASReview LAB V2：具有多个代理和一组专家的开源文本筛选系统
Jonathan de Bruin,Peter Lombaers,Casper Kaandorp et al.
Jonathan de Bruin et al.
ASReview LAB v.2 introduces an advancement in AI-assisted systematic reviewing by enabling collaborative screening with multiple experts ("a crowd of oracles") using a shared AI model. The platform supports multiple AI agents within the sam...
Ariel Rokem,Vani Mandava,Nicoleta Cristea et al.
Ariel Rokem et al.
Machine learning and artificial intelligence promise to accelerate research and understanding across many scientific disciplines. Harnessing the power of these techniques requires aggregating scientific data. In tandem, the importance of op...
The tree-based pipeline optimization tool: Tackling biomedical research problems with genetic programming and automated machine learning [0.03%]
基于树的流水线优化工具：使用遗传编程和自动机器学习解决生物医学研究问题
Jose Guadalupe Hernandez,Anil Kumar Saini,Attri Ghosh et al.
Jose Guadalupe Hernandez et al.
The tree-based pipeline optimization tool (TPOT) is one of the earliest automated machine learning (ML) frameworks developed for optimizing ML pipelines, with an emphasis on addressing the complexities of biomedical research. TPOT uses gene...
Neil P Chue Hong,Selina Aragon,Simon Hettrick et al.
Neil P Chue Hong et al.
The use of software is near-ubiquitous in research, yet it is still underrecognized despite changes in policy and practice. Notwithstanding many successful initiatives to improve the culture around research software, the authors argue that ...
Benjamin C Lee,David Brooks,Arthur van Benthem et al.
Benjamin C Lee et al.
This article presents a holistic research agenda to address the significant environmental impact of information and communication technology (ICT), which accounts for 2.1%-3.9% of global greenhouse gas emissions. It proposes several researc...
Miranda Mundt,William E Hart,Emma S Johnson et al.
Miranda Mundt et al.
Pyomo is an open-source optimization modeling software that has undergone significant evolution since its inception in 2008. Pyomo has evolved to enhance flexibility, solver integration, and community engagement. Modern collaborative tools ...