nf-gwas-pipeline: A Nextflow Genome-Wide Association Study Pipeline [0.03%]
NF-GWAS-Pipeline：一个Nextflow全基因组关联研究管线
Zeyuan Song,Anastasia Gurinovich,Anthony Federico et al.
Zeyuan Song et al.
A tool for conducting Genome-Wide Association Study (GWAS) in a systematic, automated and reproducible manner is overdue. We developed an automated GWAS pipeline by combining multiple analysis tools - including bcftools, vcftools, the R pac...
Opfi: A Python package for identifying gene clusters in large genomics and metagenomics data sets [0.03%]
Opfi：一个用于在大型基因组和元基因组数据集中识别基因簇的Python包
Alexis M Hill,James R Rybarski,Kuang Hu et al.
Alexis M Hill et al.
Gene clusters are sets of co-localized, often contiguous genes that together perform specific functions, many of which are relevant to biotechnology. There is a need for software tools that can extract candidate gene clusters from vast amou...
SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data [0.03%]
SneakerNet：一种初级基因组和元基因组读数据的质量保证与质量检查工作流程
Taylor Griswold,Curtis Kapsak,Jessica C Chen et al.
Taylor Griswold et al.
Laboratories that run Whole Genome Sequencing (WGS) produce a tremendous amount of data, up to 10 gigabytes for some common instruments. There is a need to standardize the quality assurance and quality control process (QA/QC). Therefore we ...
Jeffrey W Hollister,Dorothy Q Kellogg,Qian Lei-Parent et al.
Jeffrey W Hollister et al.
The nsink package estimates cumulative nitrogen (N) removal along a specified flow path and is based on methodologies outlined in Kellogg et al. (2010). For a user-specified watershed (i.e., hydrologic unit code (HUC)), nsink downloads all ...
CLAIRE: Constrained Large Deformation Diffeomorphic Image Registration on Parallel Computing Architectures [0.03%]
CLAIRE：并行计算架构下的约束大形变微分同胚图像配准方法
Malte Brunn,Naveen Himthani,George Biros et al.
Malte Brunn et al.
CLAIRE (Mang & Biros, 2019) is a computational framework for Constrained LArge deformation diffeomorphic Image REgistration (Mang et al., 2019). It supports highly-optimized, parallel computational kernels for (multi-node) CPU (Gholami et a...
George G Vega Yon,Paul Marjoram
George G Vega Yon
Malcolm Barrett,Joshua Millstein
Malcolm Barrett
pd-parser: A tool for Matching Photodiode Deflection Events to Time-Stamped Events [0.03%]
基于时间标签事件匹配光电二极管偏转事件的工具PD-PARSER
Alexander P Rockhill,Ahmed M Raslan,Nicole C Swann
Alexander P Rockhill
Precise synchronization of events displayed on a monitor to recordings of time series data is critical for applications such as vision or psychophysics research. To achieve this, researchers often use a photodiode to convert the luminance o...
Kinematics-vis: A Visualization Tool for the Mathematics of Human Motion [0.03%]
Kinematics-Vis：人体运动数学的可视化工具
Klevis Aliaj,Heath B Henninger
Klevis Aliaj
Kinematic analysis studies characterize human motion in healthy, pathologic, and rehabilitated subjects. These studies provide rich datasets which enable clinicians and researchers to understand disease progression, and the effects of surgi...
LCIA Formatter [0.03%]
生命周期影响评估（LCIA）格式化工具
Ben Young,Michael Srocka,Wesley Ingwersen et al.
Ben Young et al.
Life Cycle Assessment (LCA) is an established and standardized methodology to comprehensively assess environmental and public health metrics across industries and products (International Organization for Standardization, 2006). The United S...