Metagenomic classification with KrakenUniq on low-memory computers [0.03%]
基于KrakenUniq的低内存计算机元基因组分类方法
Christopher Pockrandt,Aleksey V Zimin,Steven L Salzberg
Christopher Pockrandt
Kraken and KrakenUniq are widely-used tools for classifying metagenomics sequences. A key requirement for these systems is a database containing all k-mers from all genomes that the users want to be able to detect, where k = 31 by default. ...
High-performance neural population dynamics modeling enabled by scalable computational infrastructure [0.03%]
高性能神经元群体动力学建模的可扩展计算基础设施支持
Aashish N Patel,Andrew R Sedler,Jingya Huang et al.
Aashish N Patel et al.
CVtreeMLE: Efficient Estimation of Mixed Exposures using Data Adaptive Decision Trees and Cross-Validated Targeted Maximum Likelihood Estimation in R [0.03%]
基于R中的自适应决策树和交叉验证的目标最大 likelihood估计的混合暴露的有效估计 CVtreeMLE
David McCoy,Alan Hubbard,Mark Van der Laan
David McCoy
Statistical causal inference of mixed exposures has been limited by reliance on parametric models and, until recently, by researchers considering only one exposure at a time, usually estimated as a beta coefficient in a generalized linear r...
Fergus R Cooper,Ruth E Baker,Miguel O Bernabeu et al.
Fergus R Cooper et al.
Chaste (Cancer, Heart And Soft Tissue Environment) is an open source simulation package for the numerical solution of mathematical models arising in physiology and biology. To date, Chaste development has been driven primarily by applicatio...
RandomForestsGLS: An R package for Random Forests for dependent data [0.03%]
RandomForestsGLS：用于处理相关数据的随机森林R包
Arkajyoti Saha,Sumanta Basu,Abhirup Datta
Arkajyoti Saha
With the modern advances in geographical information systems, remote sensing technologies, and low-cost sensors, we are increasingly encountering datasets where we need to account for spatial or serial dependence. Dependent observations (y ...
PatchView: A Python Package for Patch-clamp Data Analysis and Visualization [0.03%]
PatchView：用于膜片钳数据分析和可视化的Python软件包
Ming Hu,Xiaolong Jiang
Ming Hu
Jason Cory Brunson
Jason Cory Brunson
Alluvial diagrams use stacked bar plots and variable-width ribbons to represent multi-dimensional or repeated-measures data comprising categorical or ordinal variables (Bojanowski & Edwards, 2016; Rosvall & Bergstrom, 2010). The ggalluvial ...
Bryant E McDonnell,Katherine Ratliff,Michael E Tryby et al.
Bryant E McDonnell et al.
Stormwater management seeks to reduce runoff from rain or melted snow and improve water quality. Where it can absorb into soil, runoff is filtered and returns to streams, rivers, and aquifers, but in developed areas, precipitation often can...
physical_validation: A Python package to assess the physical validity of molecular simulation results [0.03%]
physical_validation：一个用于评估分子模拟结果物理有效性的Python软件包
Pascal T Merz,Wei-Tse Hsu,Matt W Thompson et al.
Pascal T Merz et al.
Molecular simulations such as molecular dynamics (MD) and Monte Carlo (MC) simulations are powerful tools allowing the prediction of experimental observables in the study of systems such as proteins, membranes, and polymeric materials. The ...
fitgrid: A Python package for multi-channel event-related time series regression modeling [0.03%]
基于多通道事件相关时间序列回归的Python包fitgrid
Thomas P Urbach,Andrey S Portnoy
Thomas P Urbach
Electrical brain activity related to external stimulation and internal mental events can be measured at the scalp as tiny time-varying electric potential waveforms (electroencephalogram; EEG), typically a few tens of microvolts peak to peak...