Newell H Moser,Alexander K Landauer,Orion L Kafka
Newell H Moser
Image Processing in Python for 3D image stacks, or IMPPY3D, is a free and open-source software (FOSS) repository that simplifies post-processing and 3D shape characterization for grayscale image stacks, otherwise known as volumetric images,...
Johannes Zauner,Steffen Hartmeyer,Manuel Spitschan
Johannes Zauner
Light plays an important role in human health and well-being, which necessitates the study of the effects of personal light exposure in real-world settings, measured by means of wearable devices. A growing number of studies incorporate thes...
MousebreedeR: A novel software to assist in the design of breeding schema for complex genotypes of experimental organisms [0.03%]
MousebreedeR：用于辅助设计实验生物复杂基因型的育种模式的新软件
Mike Sportiello,David J Topham
Mike Sportiello
With the advent of gene editing playing a regular role in producing new experimental models, the need to get the appropriate allele at each respective locus in a model organism is now common. Instead of simple "knockout" vs "wildtype" mouse...
BART-Survival: A Bayesian machine learning approach to survival analyses in Python [0.03%]
BART-Survival：一种用于Python生存分析的贝叶斯机器学习方法
Jacob Tiegs,Julia Raykin,Ilia Rochlin
Jacob Tiegs
BART-Survival is a Python package that allows time-to-event (survival) analyses in discrete-time using the non-parametric machine learning algorithm, Bayesian Additive Regression Trees (BART). BART-Survival combines the performance of the B...
harmonize-wq: Standardize, clean and wrangle Water Quality Portal data into more analytic-ready formats [0.03%]
调和-WQ：将水资源质量 Portal 数据标准化、清理并整合到更便于分析的格式中
Justin Bousquin,Cristina A Mullin
Justin Bousquin
Lingfeng Luo,Wenbo Wu,Jeremy M G Taylor et al.
Lingfeng Luo et al.
The surtvep package is an open-source software designed for estimating time-varying effects in survival analysis using the Cox non-proportional hazards model in R. With the rapid increase in large-scale time-to-event data from national dise...
primerForge: a Python program for identifying primer pairs capable of distinguishing groups of genomes from each other [0.03%]
primerForge：一个Python程序用于识别能够区分基因组组别的引物对
Joseph S Wirth,Lee S Katz,Grant M Williams et al.
Joseph S Wirth et al.
In both molecular epidemiology and microbial ecology, it is useful to be able to categorize specific strains of microorganisms in either an ingroup or an outgroup in a given population, e.g. to distinguish a pathogenic strain of interest fr...
DataLad: distributed system for joint management of code, data, and their relationship [0.03%]
分布式管理系统同时管理代码、数据及二者关系
Yaroslav O Halchenko,Kyle Meyer,Benjamin Poldrack et al.
Yaroslav O Halchenko et al.
DataLad is a Python-based tool for the joint management of code, data, and their relationship, built on top of a versatile system for data logistics (git-annex) and the most popular distributed version control system (Git). It adapts princi...
David J Schodt,Michael J Wester,Mohamadreza Fazel et al.
David J Schodt et al.
Fluorescence single molecule imaging comprises a variety of techniques that involve detecting individual fluorescent molecules. Many of these techniques involve localizing individual fluorescent molecules with precisions below the diffracti...
HeuDiConv - flexible DICOM conversion into structured directory layouts [0.03%]
HeuDiConv-灵活的DICOM转换到结构化的目录布局中
Yaroslav O Halchenko,Mathias Goncalves,Satrajit Ghosh et al.
Yaroslav O Halchenko et al.