CATE: A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests on large scale genomic data [0.03%]
基于CUDA的高度并行化的大规模基因组数据进化测试的快速可扩展实现(CATE)
Deshan Perera,Elsa Reisenhofer,Said Hussein et al.
Deshan Perera et al.
Statistical tests for molecular evolution provide quantifiable insights into the selection pressures that govern a genome's evolution. Increasing sample sizes used for analysis leads to higher statistical power. However, this requires more ...
SlicerMorph: An open and extensible platform to retrieve, visualize and analyze 3D morphology [0.03%]
SlicerMorph：一个开放可扩展的三维形态学数据获取、可视化及分析平台
Sara Rolfe,Steve Pieper,Arthur Porto et al.
Sara Rolfe et al.
1. Large scale digitization projects such as #ScanAllFishes and oVert are generating high-resolution microCT scans of vertebrates by the thousands. Data from these projects are shared with the community using aggregate 3D specimen repositor...
Samuel E Champer,Bryan Chae,Benjamin C Haller et al.
Samuel E Champer et al.
1. Continuous-space population models can yield significantly different results from their panmictic counterparts when assessing evolutionary, ecological, or population-genetic processes. However, the computational burden of spatial models ...
bistro: An R package for vector bloodmeal identification by short tandem repeat overlap [0.03%]
基于短串联重复序列重叠的血液进餐识别R包：bistro
Zena Lapp,Lucy Abel,Judith Mangeni et al.
Zena Lapp et al.
Measuring vector-human contact in a natural setting can inform precise targeting of interventions to interrupt transmission of vector-borne diseases. One approach is to directly match human DNA in vector bloodmeals to the individuals who we...
Identifying rare variants inconsistent with identity-by-descent in population-scale whole-genome sequencing data [0.03%]
在人群规模的全基因组测序数据中识别罕见且不符合身份同一性的变异体
Kelsey E Johnson,Christopher J Adams,Benjamin F Voight
Kelsey E Johnson
Analyses of genetic variation typically assume that rare variants within a population are inherited from a single common ancestral event identity-by-descent (IBD). However, there are genetic and technical processes through which rare varian...
Scott W Wolf,Dee M Ruttenberg,Daniel Y Knapp et al.
Scott W Wolf et al.
1. Significant advances in computational ethology have allowed the quantification of behaviour in unprecedented detail. Tracking animals in social groups, however, remains challenging as most existing methods can either capture pose or robu...
Jordan D A Hart,Michael N Weiss,Daniel W Franks et al.
Jordan D A Hart et al.
Animal social networks are often constructed from point estimates of edge weights. In many contexts, edge weights are inferred from observational data, and the uncertainty around estimates can be affected by various factors. Though this has...
Argos: A toolkit for tracking multiple animals in complex visual environments [0.03%]
Argos：复杂视觉环境中多动物追踪的工具包
Subhasis Ray,Mark A Stopfer
Subhasis Ray
Automatically tracking the positions of multiple animals is often necessary for studying behaviours. This task involves multiple object tracking, a challenging problem in computer vision. Recent advances in machine learning applied to video...
Elzbieta Iwaszkiewicz-Eggebrecht,Emma Granqvist,Mateusz Buczek et al.
Elzbieta Iwaszkiewicz-Eggebrecht et al.
1: Metabarcoding (high-throughput sequencing of marker gene amplicons) has emerged as a promising and cost-effective method for characterizing insect community samples. Yet, the methodology varies greatly among studies and its performance h...
Principled, practical, flexible, fast: a new approach to phylogenetic factor analysis [0.03%]
原则性、实用性和灵活性强且快速的系统发育因子分析的新方法
Gabriel W Hassler,Brigida Gallone,Leandro Aristide et al.
Gabriel W Hassler et al.
Biological phenotypes are products of complex evolutionary processes in which selective forces influence multiple biological trait measurements in unknown ways. Phylogenetic comparative methods seek to disentangle these relationships across...