New and revised gene ontology biological process terms describe multiorganism interactions critical for understanding microbial pathogenesis and sequences of concern [0.03%]
新的和修订的基因本体生物学过程术语描述了理解微生物致病性和关切序列至关重要的多生物相互作用
Gene Godbold,Jody Proescher,Pascale Gaudet
Gene Godbold
Background: There is a new framework from the United States government for screening synthetic nucleic acids. Beginning in October of 2026, it calls for the screening of sequences 50 nucleotides or greater in length that ...
Gene expression knowledge graph for patient representation and diabetes prediction [0.03%]
用于病人表示和糖尿病预测的基因表达知识图谱
Rita T Sousa,Heiko Paulheim
Rita T Sousa
Diabetes is a worldwide health issue affecting millions of people. Machine learning methods have shown promising results in improving diabetes prediction, particularly through the analysis of gene expression data. While gene expression data...
Expanding the concept of ID conversion in TogoID by introducing multi-semantic and label features [0.03%]
通过引入多语义和标签特征扩展TogoID中的身份转换概念
Shuya Ikeda,Kiyoko F Aoki-Kinoshita,Hirokazu Chiba et al.
Shuya Ikeda et al.
Background: TogoID ( https://togoid.dbcls.jp/ ) is an identifier (ID) conversion service designed to link IDs across diverse categories of life science databases. With its ability to obtain IDs related in different semant...
FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis [0.03%]
一种用于集成多组学数据分析的FAIR数据基础设施-Fair Data Cube
Xiaofeng Liao,Thomas H A Ederveen,Anna Niehues et al.
Xiaofeng Liao et al.
Motivation: We are witnessing an enormous growth in the amount of molecular profiling (-omics) data. The integration of multi-omics data is challenging. Moreover, human multi-omics data may be privacy-sensitive and can be...
Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI) [0.03%]
基于人工智能的动态检索增强本体生成（DRAGON-AI）
Sabrina Toro,Anna V Anagnostopoulos,Susan M Bello et al.
Sabrina Toro et al.
Background: Ontologies are fundamental components of informatics infrastructure in domains such as biomedical, environmental, and food sciences, representing consensus knowledge in an accurate and computable form. However...
MeSH2Matrix: combining MeSH keywords and machine learning for biomedical relation classification based on PubMed [0.03%]
基于PubMed的MeSH关键词与机器学习结合的生物医学关系分类方法(MeSH2Matrix)
Houcemeddine Turki,Bonaventure F P Dossou,Chris Chinenye Emezue et al.
Houcemeddine Turki et al.
Biomedical relation classification has been significantly improved by the application of advanced machine learning techniques on the raw texts of scholarly publications. Despite this improvement, the reliance on large chunks of raw text mak...
Beata Fonferko-Shadrach,Huw Strafford,Carys Jones et al.
Beata Fonferko-Shadrach et al.
Background: Natural language processing (NLP) is increasingly being used to extract structured information from unstructured text to assist clinical decision-making and aid healthcare research. The availability of expert-...
An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology [0.03%]
一种可扩展的、统一的回顾性临床数据分析建模方法：BrainTeaser本体论
Guglielmo Faggioli,Laura Menotti,Stefano Marchesin et al.
Guglielmo Faggioli et al.
Automatic disease progression prediction models require large amounts of training data, which are seldom available, especially when it comes to rare diseases. A possible solution is to integrate data from different medical centres. Neverthe...
Concretizing plan specifications as realizables within the OBO foundry [0.03%]
在OBO图书馆中将计划规范具体化为可实施的规范
William D Duncan,Matthew Diller,Damion Dooley et al.
William D Duncan et al.
Background: Within the Open Biological and Biomedical Ontology (OBO) Foundry, many ontologies represent the execution of a plan specification as a process in which a realizable entity that concretizes the plan specificati...
Mapping vaccine names in clinical trials to vaccine ontology using cascaded fine-tuned domain-specific language models [0.03%]
利用级联的领域特定语言模型微调方法映射临床试验中的疫苗名称到疫苗本体中
Jianfu Li,Yiming Li,Yuanyi Pan et al.
Jianfu Li et al.
Background: Vaccines have revolutionized public health by providing protection against infectious diseases. They stimulate the immune system and generate memory cells to defend against targeted diseases. Clinical trials e...