Shaker El-Sappagh,Daehan Kwak,Farman Ali et al.
Shaker El-Sappagh et al.
Background: Treatment of type 2 diabetes mellitus (T2DM) is a complex problem. A clinical decision support system (CDSS) based on massive and distributed electronic health record data can facilitate the automation of this...
Exploiting graph kernels for high performance biomedical relation extraction [0.03%]
利用图核进行高性能的生物医学关系抽取
Nagesh C Panyam,Karin Verspoor,Trevor Cohn et al.
Nagesh C Panyam et al.
Background: Relation extraction from biomedical publications is an important task in the area of semantic mining of text. Kernel methods for supervised relation extraction are often preferred over manual feature engineeri...
Viktor Senderov,Kiril Simov,Nico Franz et al.
Viktor Senderov et al.
Background: The biodiversity domain, and in particular biological taxonomy, is moving in the direction of semantization of its research outputs. The present work introduces OpenBiodiv-O, the ontology that serves as the ba...
MIRO: guidelines for minimum information for the reporting of an ontology [0.03%]
MIRO：本体报告的最小信息标准指南
Nicolas Matentzoglu,James Malone,Chris Mungall et al.
Nicolas Matentzoglu et al.
Background: Creation and use of ontologies has become a mainstream activity in many disciplines, in particular, the biomedical domain. Ontology developers often disseminate information about these ontologies in peer-revie...
Daniel Faria,Catia Pesquita,Isabela Mott et al.
Daniel Faria et al.
Background: Biomedical ontologies pose several challenges to ontology matching due both to the complexity of the biomedical domain and to the characteristics of the ontologies themselves. The biomedical tracks in the Onto...
The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability [0.03%]
可扩展本体开发(XOD)原则及其工具的实现以支持本体互操作性
Yongqun He,Zuoshuang Xiang,Jie Zheng et al.
Yongqun He et al.
Ontologies are critical to data/metadata and knowledge standardization, sharing, and analysis. With hundreds of biological and biomedical ontologies developed, it has become critical to ensure ontology interoperability and the usage of inte...
CUILESS2016: a clinical corpus applying compositional normalization of text mentions [0.03%]
CUILESS2016：一种文本词条组合规范的临床语料库
John D Osborne,Matthew B Neu,Maria I Danila et al.
John D Osborne et al.
Background: Traditionally text mention normalization corpora have normalized concepts to single ontology identifiers ("pre-coordinated concepts"). Less frequently, normalization corpora have used concepts with multiple id...
Improving the interoperability of biomedical ontologies with compound alignments [0.03%]
改进生物医学本体的互操作性：复合对齐方法
Daniela Oliveira,Catia Pesquita
Daniela Oliveira
Background: Ontologies are commonly used to annotate and help process life sciences data. Although their original goal is to facilitate integration and interoperability among heterogeneous data sources, when these sources...
An automatic approach for constructing a knowledge base of symptoms in Chinese [0.03%]
构建汉语症状知识库的自动方法
Tong Ruan,Mengjie Wang,Jian Sun et al.
Tong Ruan et al.
Background: While a large number of well-known knowledge bases (KBs) in life science have been published as Linked Open Data, there are few KBs in Chinese. However, KBs in Chinese are necessary when we want to automatical...
DisSetSim: an online system for calculating similarity between disease sets [0.03%]
基于集合的疾病相似性计算网站 DisSetSim
Yang Hu,Lingling Zhao,Zhiyan Liu et al.
Yang Hu et al.
Background: Functional similarity between molecules results in similar phenotypes, such as diseases. Therefore, it is an effective way to reveal the function of molecules based on their induced diseases. However, the lack...