Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs [0.03%]
基于高分段对计算基因组间距离的标准操作规程
Alexander F Auch,Hans-Peter Klenk,Markus Göker
Alexander F Auch
DNA-DNA hybridization (DDH) is a widely applied wet-lab technique to obtain an estimate of the overall similarity between the genomes of two organisms. To base the species concept for prokaryotes ultimately on DDH was chosen by microbiologi...
Lars Snipen,David W Ussery
Lars Snipen
We present the pan-genome tree as a tool for visualizing similarities and differences between closely related microbial genomes within a species or genus. Distance between genomes is computed as a weighted relative Manhattan distance based ...
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison [0.03%]
基于基因组对比的数字DNA杂交技术在微生物种界线划分中的应用
Alexander F Auch,Mathias von Jan,Hans-Peter Klenk et al.
Alexander F Auch et al.
The pragmatic species concept for Bacteria and Archaea is ultimately based on DNA-DNA hybridization (DDH). While enabling the taxonomist, in principle, to obtain an estimate of the overall similarity between the genomes of two strains, this...
Complete genome sequence of Haloterrigena turkmenica type strain (4k) [0.03%]
极端嗜盐古菌Haloterrigena turkmenica标准株4k的完全基因组序列
Elisabeth Saunders,Brian J Tindall,Regine Fähnrich et al.
Elisabeth Saunders et al.
Haloterrigena turkmenica (Zvyagintseva and Tarasov 1987) Ventosa et al. 1999, comb. nov. is the type species of the genus Haloterrigena in the euryarchaeal family Halobacteriaceae. It is of phylogenetic interest because of the yet unclear p...
Natalia Ivanova,Chris Daum,Elke Lang et al.
Natalia Ivanova et al.
Haliangium ochraceum Fudou et al. 2002 is the type species of the genus Haliangium in the myxococcal family 'Haliangiaceae'. Members of the genus Haliangium are the first halophilic myxobacterial taxa described. The cells of the species fol...
Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034) [0.03%]
产碱糖壳菌标准株（UQM 2034）完整基因组序列
Tijana Glavina Del Rio,Birte Abt,Stefan Spring et al.
Tijana Glavina Del Rio et al.
Chitinophaga pinensis Sangkhobol and Skerman 1981 is the type strain of the species which is the type species of the rapidly growing genus Chitinophaga in the sphingobacterial family 'Chitinophagaceae'. Members of the genus Chitinophaga var...
Complete genome sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419 [0.03%]
羽脉根菌门杆菌(Medicago微固氮菌)WSM419株系完整基因组序列
Wayne Reeve,Patrick Chain,Graham O&#x;Hara et al.
Wayne Reeve et al.
Ensifer (Sinorhizobium) medicae is an effective nitrogen fixing microsymbiont of a diverse range of annual Medicago (medic) species. Strain WSM419 is an aerobic, motile, non-spore forming, Gram-negative rod isolated from a M. murex root nod...
Complete genome sequence of Rhizobium leguminosarum bv trifolii strain WSM2304, an effective microsymbiont of the South American clover Trifolium polymorphum [0.03%]
根瘤菌豆科细菌型WSM2304的完整基因组序列，该菌是南美红三叶草Trifolium polymorphum的高效微共生体
Wayne Reeve,Graham O&#x;Hara,Patrick Chain et al.
Wayne Reeve et al.
Rhizobium leguminosarum bv trifolii is the effective nitrogen fixing microsymbiont of a diverse range of annual and perennial Trifolium (clover) species. Strain WSM2304 is an aerobic, motile, non-spore forming, Gram-negative rod, isolated f...
Sabine Gronow,Sabine Welnitz,Alla Lapidus et al.
Sabine Gronow et al.
Veillonella parvula (Veillon and Zuber 1898) Prévot 1933 is the type species of the genus Veillonella in the family Veillonellaceae within the order Clostridiales. The species V. parvula is of interest because it is frequently isolated fro...
Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022) [0.03%]
模式菌株S 6022的 complete 基因组序列热球菌
Amrita Pati,Kurt Labutti,Rüdiger Pukall et al.
Amrita Pati et al.
Sphaerobacter thermophilus Demharter et al. 1989 is the sole and type species of the genus Sphaerobacter, which is the type genus of the family Sphaerobacteraceae, the order Sphaerobacterales and the subclass Sphaerobacteridae. Phylogenetic...