Using RegulonDB, the Escherichia coli K-12 Gene Regulatory Transcriptional Network Database [0.03%]
基于RegulonDB的E.coli K-12基因调控转录网络数据库
Heladia Salgado,Irma Martínez-Flores,Víctor H Bustamante et al.
Heladia Salgado et al.
In RegulonDB, for over 25 years, we have been gathering knowledge by manual curation from original scientific literature on the regulation of transcription initiation and genome organization in transcription units of the Escherichia coli K-...
Tin Nguyen,Cristina Mitrea,Sorin Draghici
Tin Nguyen
Identification of impacted pathways is an important problem because it allows us to gain insights into the underlying biology beyond the detection of differentially expressed genes. In the past decade, a plethora of methods have been develo...
Exploring the Genetic Landscape of Metabolic Phenotypes with MetaboSignal [0.03%]
利用MetaboSignal探索代谢表型的遗传景观
Andrea Rodriguez-Martinez,Rafael Ayala,Joram M Posma et al.
Andrea Rodriguez-Martinez et al.
MetaboSignal is an R/Bioconductor package designed to explore the relationships between genes and metabolites, using the Kyoto Encyclopedia of Genes and Genomes (KEGG) as its primary database. It is a network-based approach that allows over...
EMDB Web Resources [0.03%]
EMDB网页资源
Sanja Abbott,Andrii Iudin,Paul K Korir et al.
Sanja Abbott et al.
The Electron Microscopy Data Bank (EMDB; http://emdb-empiar.org) is a global openly-accessible archive of biomolecular and cellular 3D reconstructions derived from electron microscopy (EM) data. EMBL-EBI develops web-based resources to faci...
SPIN: Submitting Sequences Determined at Protein Level to UniProt [0.03%]
基于蛋白质提交序列的UniProt数据库注释工具SPIN
Klemens Pichler,Kate Warner,Michele Magrane;UniProt Consortium
Klemens Pichler
Public availability of biological sequences is essential for their widespread access and use by the research community. The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and functional data. While mos...
The GWIPS-viz Browser [0.03%]
GWIPS-vz浏览器
Stephen J Kiniry,Audrey M Michel,Pavel V Baranov
Stephen J Kiniry
GWIPS-viz is a publicly available browser that provides Genome Wide Information on Protein Synthesis through the visualization of ribosome profiling data. Ribosome profiling (Ribo-seq) is a high-throughput technique which isolates fragments...
Ioanna Kalvari,Eric P Nawrocki,Joanna Argasinska et al.
Ioanna Kalvari et al.
Rfam is a database of non-coding RNA families in which each family is represented by a multiple sequence alignment, a consensus secondary structure, and a covariance model. Using a combination of manual and literature-based curation and a c...
Using LICHeE and BAMSE for Reconstructing Cancer Phylogenetic Trees [0.03%]
使用LICHeE和BAMSE进行癌症系统发育树的重建
Camir Ricketts,Victoria Popic,Hosein Toosi et al.
Camir Ricketts et al.
The reconstruction of cancer phylogeny trees and quantifying the evolution of the disease is a challenging task. LICHeE and BAMSE are two computational tools designed and implemented recently for this purpose. They both utilize estimated va...
Using the Seven Bridges Cancer Genomics Cloud to Access and Analyze Petabytes of Cancer Data [0.03%]
利用Seven Bridges肿瘤基因组云来访问和分析千兆字节的肿瘤数据
Raunaq Malhotra,Isheeta Seth,Erik Lehnert et al.
Raunaq Malhotra et al.
Next-generation sequencing has produced petabytes of data, but accessing and analyzing these data remain challenging. Traditionally, researchers investigating public datasets like The Cancer Genome Atlas (TCGA) would download the data to a ...
Using the Arabidopsis Information Resource (TAIR) to Find Information About Arabidopsis Genes [0.03%]
利用拟南芥信息资源(TAIR)检索拟南芥基因信息
Leonore Reiser,Shabari Subramaniam,Donghui Li et al.
Leonore Reiser et al.
The Arabidopsis Information Resource (TAIR; http://arabidopsis.org) is a comprehensive Web resource of Arabidopsis biology for plant scientists. TAIR curates and integrates information about genes, proteins, gene function, orthologs, gene e...