Using EMBL-EBI Services via Web Interface and Programmatically via Web Services [0.03%]
EMBL-EBI数据库的网络界面及通过网络服务进行程序下载和使用
Fábio Madeira,Nandana Madhusoodanan,Joon Lee et al.
Fábio Madeira et al.
The European Bioinformatics Institute (EMBL-EBI) provides access to a wide range of core databases and analysis tools that are of key importance in bioinformatics. As well as providing web interfaces to these resources, web services are ava...
Integrating Bacterial ChIP-seq and RNA-seq Data With SnakeChunks [0.03%]
使用SnakeChunks整合细菌ChIP-seq和RNA-seq数据
Claire Rioualen,Lucie Charbonnier-Khamvongsa,Julio Collado-Vides et al.
Claire Rioualen et al.
Next-generation sequencing (NGS) is becoming a routine approach in most domains of the life sciences. To ensure reproducibility of results, there is a crucial need to improve the automation of NGS data processing and enable forthcoming stud...
Utilizing iVariantGuide for Variant Assessment of Next-Generation Sequencing [0.03%]
利用iVariantGuide进行下一代测序变异评估
Sophia R Chaudhry,Michael A Tainsky
Sophia R Chaudhry
Molecular genetic testing provides the capability for personalized prediction, diagnosis, and pharmacological treatments of disease and disorders. Variant assessment of next-generation sequencing (NGS) is a crucial component of genetic test...
Visualizing Post-Translational Modifications in Protein Interaction Networks Using PTMOracle [0.03%]
利用PTMOracle在蛋白质相互作用网络中可视化位点修饰状态及相关调控关系
Aidan P Tay,Angelita Liang,Marc R Wilkins et al.
Aidan P Tay et al.
Post-translational modifications (PTMs) of proteins act as key regulators of protein activity, including the regulation of protein-protein interactions (PPIs). However, exploring functional links between PTMs and PPIs can be difficult. PTMO...
Discovering Transcriptional Regulatory Elements From Run-On and Sequencing Data Using the Web-Based dREG Gateway [0.03%]
利用网络版的dREG gateway从新合成并测序的数据中发现转录调控元件
Tinyi Chu,Zhong Wang,Shao-Pei Chou et al.
Tinyi Chu et al.
Transcription is a chromatin mark that can be used effectively to identify the location of active enhancers and promoters, collectively known as transcriptional regulatory elements (TREs). We recently introduced dREG, a tool for the identif...
Guangyan Zhou,Jianguo Xia
Guangyan Zhou
OmicsNet is a novel web-based tool for creating and visualizing complex biological networks in 3D space. By coupling a comprehensive knowledgebase with the powerful WebGL technology, OmicsNet allows researchers to intuitively explore molecu...
Identification of Key Residues in Proteins Through Centrality Analysis and Flexibility Prediction with RINspector [0.03%]
基于RINspector的中心性和柔韧性分析的关键残基识别研究
Guillaume Brysbaert,Théo Mauri,Jérôme de Ruyck et al.
Guillaume Brysbaert et al.
Protein structures inherently contain information that can be used to decipher their functions, but the exploitation of this knowledge is not trivial. We recently developed an app for the Cytoscape network visualization and analysis program...
Volodimir Olexiouk,Gerben Menschaert
Volodimir Olexiouk
Ribosome profiling involves sequencing of approximately 30-base-long stretches of ribosome-protected mRNA. The technique enables genome-wide mapping of RNA undergoing active translation. Numerous small open reading frames have been identifi...
Katharina J Hoff,Mario Stanke
Katharina J Hoff
AUGUSTUS is a tool for finding protein-coding genes and their exon-intron structure in genomic sequences. It does not necessarily require additional experimental input, as it can be applied in so-called ab initio mode. However, extrinsic ev...
P Romano,A Profumo,A Facchiano
P Romano
Geena 2 is a tool for filtering, averaging, and aligning MALDI/TOF mass spectra, designed to assist scientists in the analysis of high volumes of data and support them for comparative studies. Three web interfaces are available with differe...