Finding homologs in amino acid sequences using network BLAST searches [0.03%]
利用网络BLAST搜索在氨基酸序列中寻找同系物
Istvan Steve Ladunga
Istvan Steve Ladunga
Ian J Forsythe,David S Wishart
Ian J Forsythe
The Human Metabolome Database (HMDB) is a Web-based bioinformatic/cheminformatic resource with detailed information about human metabolites and metabolic enzymes. It can be used for fields of study including metabolomics, biochemistry, clin...
Bin Ma,Gilles Lajoie
Bin Ma
De novo sequencing is an effective method for identifying unknown peptide sequences from their tandem mass spectra. This unit briefly introduces how this can be done manually. A protocol for using the PEAKS online software for automated de ...
Searching the Mouse Genome Informatics (MGI) resources for information on mouse biology from genotype to phenotype [0.03%]
利用Mouse Genome Informatics (MGI)资源查询从基因型到表型的小鼠生物学信息
David R Shaw
David R Shaw
The Mouse Genome Informatics (MGI) resource provides the research community with access to information on the genetics, genomics, and biology of the laboratory mouse. Core data in MGI include gene characterization and function, phenotype an...
Garrett M Morris,Ruth Huey,Arthur J Olson
Garrett M Morris
This unit describes how to set up and analyze ligand-protein docking calculations using AutoDock and the graphical user interface, AutoDockTools (ADT). The AutoDock scoring function is a subset of the AMBER force field that treats molecules...
Jen Hsin,Anton Arkhipov,Ying Yin et al.
Jen Hsin et al.
VMD (Visual Molecular Dynamics) is a molecular visualization and analysis program designed for biological systems such as proteins, nucleic acids, lipid bilayer assemblies, etc. This unit will serve as an introductory VMD tutorial. We will ...
Andreas D Baxevanis
Andreas D Baxevanis
One of the most widely used interfaces for the retrieval of information from biological databases is the NCBI Entrez system. Entrez capitalizes on the fact that there are pre-existing, logical relationships between the individual entries fo...
Browsing multidimensional molecular networks with the generic network browser (N-Browse) [0.03%]
通用网络浏览器(N-Browse)浏览多维分子网络
Huey-Ling Kao,Kristin C Gunsalus
Huey-Ling Kao
N-Browse is a graphical network browser for the visualization and navigation of heterogeneous molecular interaction data. N-Browse runs as a Java applet in a Web browser, providing highly dynamic and interactive on-demand access to network ...
Natalie Yeung,Melissa S Cline,Allan Kuchinsky et al.
Natalie Yeung et al.
Cytoscape is a free software package for visualizing, modeling, and analyzing molecular and genetic interaction networks. As a key feature, Cytoscape enables biologists to determine and analyze the interconnectivity of a list of genes or pr...
The Gene Ontology (GO) project: structured vocabularies for molecular biology and their application to genome and expression analysis [0.03%]
基因本体论（GO）项目：分子生物学的结构词汇及其在基因组和表达分析中的应用
Judith A Blake,Midori A Harris
Judith A Blake
Scientists wishing to utilize genomic data have quickly come to realize the benefit of standardizing descriptions of experimental procedures and results for computer-driven information retrieval systems. The focus of the Gene Ontology proje...