Géraldine Jean,André Kahles,Vipin T Sreedharan et al.
Géraldine Jean et al.
Next-generation sequencing technologies have revolutionized genome and transcriptome sequencing. RNA-Seq experiments are able to generate huge amounts of transcriptome sequence reads at a fraction of the cost of Sanger sequencing. Reads pro...
Medha Bhagwat
Medha Bhagwat
The Single-Nucleotide Polymorphism database (dbSNP) is a variation database at the National Center for Biotechnology Information (NCBI). It is a public repository of submitted nucleotide variations and is part of NCBI's search and retrieval...
Sheldon J McKay,Ismael A Vergara,Jason E Stajich
Sheldon J McKay
Genome Browsers are software that allow the user to view genome annotations in the context of a reference sequence, such as a chromosome, contig, scaffold, etc. The Generic Genome Browser (GBrowse) is an open-source genome browser package d...
Oleg V Krokhin,Vic Spicer
Oleg V Krokhin
The vast majority of modern bottom-up proteomic protocols include chromatographic reversed-phase (RP) fractionation of peptides prior to mass-spectrometric analysis. Retention time information can be easily extracted from LC-MS data and it ...
Using the Velvet de novo assembler for short-read sequencing technologies [0.03%]
利用Velvet脱氧核糖核酸从头组装程序进行短读测序技术的研究
Daniel R Zerbino
Daniel R Zerbino
The Velvet de novo assembler was designed to build contigs and eventually scaffolds from short-read sequencing data. This protocol describes how to use Velvet, interpret its output, and tune its parameters for optimal results. It also cover...
Exploring zebrafish genomic, functional and phenotypic data using ZFIN [0.03%]
利用斑马鱼信息学网络(ZFIN)探索斑马鱼的基因组、功能和表型数据
Sridhar Ramachandran,Barbara Ruef,Christian Pich et al.
Sridhar Ramachandran et al.
The zebrafish model organism database (ZFIN) provides a Web resource of zebrafish genomic, genetic, developmental, and phenotypic data. ZFIN curates and integrates data from current literature and from direct data submissions from laborator...
Analyzing shotgun proteomic data with PatternLab for proteomics [0.03%]
PatternLab for Proteomics 软件在蛋白质组学领域中的应用及评价：以_shotgun_蛋白质组数据分析为例
Paulo C Carvalho,John R Yates Iii,Valmir C Barbosa
Paulo C Carvalho
PatternLab for proteomics is a one-stop shop computational environment for analyzing shotgun proteomic data. Its modules provide means to pinpoint proteins/peptides that are differentially expressed and those that are unique to a state. It ...
MultiPipMaker: a comparative alignment server for multiple DNA sequences [0.03%]
多序列DNA比较对齐工具MultiPipMaker服务器
Laura Elnitski,Richard Burhans,Cathy Riemer et al.
Laura Elnitski et al.
The MultiPipMaker World Wide Web server (http://www.bx.psu.edu) provides a tool for aligning multiple DNA sequences and visualizing regions of conservation among them. This unit describes its use and gives an explanation of the resulting ou...
Xosé M Fernández-Suárez,Michael K Schuster
Xosé M Fernández-Suárez
The Ensembl project provides a comprehensive source of automatic annotation of the human genome sequence, as well as other species of biomedical interest, with confirmed gene predictions that have been integrated with external data sources....
Using the Arabidopsis information resource (TAIR) to find information about Arabidopsis genes [0.03%]
利用拟南芥信息资源(TAIR)检索拟南芥基因信息
Philippe Lamesch,Kate Dreher,David Swarbreck et al.
Philippe Lamesch et al.
The Arabidopsis Information Resource (TAIR; http://arabidopsis.org) is a comprehensive Web resource of Arabidopsis biology for plant scientists. TAIR curates and integrates information about genes, proteins, gene function, gene expression, ...