Jennifer Hillman-Jackson,Dave Clements,Daniel Blankenberg et al.
Jennifer Hillman-Jackson et al.
Innovations in biomedical research technologies continue to provide experimental biologists with novel and increasingly large genomic and high-throughput data resources to be analyzed. As creating and obtaining data has become easier, the k...
Mao Tanabe,Minoru Kanehisa
Mao Tanabe
KEGG (Kyoto Encyclopedia of Genes and Genomes) is a bioinformatics resource for understanding the functions and utilities of cells and organisms from both high-level and genomic perspectives. It is a self-sufficient, integrated resource con...
LC-MS data processing with MAVEN: a metabolomic analysis and visualization engine [0.03%]
基于MAVEN的LC-MS数据处理：代谢组分析及可视化引擎
Michelle F Clasquin,Eugene Melamud,Joshua D Rabinowitz
Michelle F Clasquin
MAVEN is an open-source software program for interactive processing of LC-MS-based metabolomics data. MAVEN enables rapid and reliable metabolite quantitation from multiple reaction monitoring data or high-resolution full-scan mass spectrom...
Identification of peptide features in precursor spectra using Hardklör and Krönik [0.03%]
基于Hardklör和Krönik的预 cursor谱图肽段特征识别方法
Michael R Hoopmann,Michael J MacCoss,Robert L Moritz
Michael R Hoopmann
Hardklör and Krönik are software tools for feature detection and data reduction of high-resolution mass spectra. Hardklör is used to reduce peptide isotope distributions to a single monoisotopic mass and charge state, and can deconvolve ...
Identifying proteomic LC-MS/MS data sets with Bumbershoot and IDPicker [0.03%]
使用Bumbershoot和IDpicker识别蛋白质组LC-MS/MS数据集
Jerry D Holman,Ze-Qiang Ma,David L Tabb
Jerry D Holman
The identification of peptides and proteins by LC-MS/MS requires the use of bioinformatics. Tools developed in the Tabb Laboratory contribute significant flexibility and discrimination to this process. The Bumbershoot tools (MyriMatch, Dire...
The Bluejay genome browser [0.03%]
蓝莺基因组浏览器
Jung Soh,Paul M K Gordon,Christoph W Sensen
Jung Soh
The Bluejay genome browser is a stand-alone visualization tool for the multi-scale viewing of annotated genomes and other genomic elements. Bluejay allows users to customize display features to suit their needs, and produces publication-qua...
Medha Bhagwat,Lynn Young,Rex R Robison
Medha Bhagwat
The BLAST-Like Alignment Tool (BLAT) is used to find genomic sequences that match a protein or DNA sequence submitted by the user. BLAT is typically used for searching similar sequences within the same or closely related species. It was dev...
Gregory A Petsko,John R Yates rd
Gregory A Petsko
Molecular interactions are key processes that drive the functions of molecules. Large data sets of protein interaction data are being assembled that will help analyze structural and functional aspects of interactions. This chapter introduce...
Joshua Eckels,Peter Hussey,Elizabeth K Nelson et al.
Joshua Eckels et al.
LabKey Server (formerly CPAS, the Computational Proteomics Analysis System) provides a Web-based platform for mining data from liquid chromatography-tandem mass spectrometry (LC-MS/MS) proteomic experiments. This open source platform suppor...
Using the scan-x Web site to predict protein post-translational modifications [0.03%]
利用scan-x网站预测蛋白质的翻译后修饰
Michael F Chou,Daniel Schwartz
Michael F Chou
The recent plethora of proteomic mass spectrometry data is providing evidence that almost every protein in the cell undergoes some form of post-translational modification. We describe a protocol to use the scan-x Web site to view predicted ...