Felix Gabler,Seung-Zin Nam,Sebastian Till et al.
Felix Gabler et al.
The MPI Bioinformatics Toolkit (https://toolkit.tuebingen.mpg.de) provides interactive access to a wide range of the best-performing bioinformatics tools and databases, including the state-of-the-art protein sequence comparison methods HHbl...
Exploring Manually Curated Annotations of Intrinsically Disordered Proteins with DisProt [0.03%]
使用DisProt探索手动整理的内在无序蛋白质注释
Federica Quaglia,András Hatos,Damiano Piovesan et al.
Federica Quaglia et al.
DisProt is the major repository of manually curated data for intrinsically disordered proteins collected from the literature. Although lacking a stable tertiary structure under physiological conditions, intrinsically disordered proteins car...
Network Building with the Cytoscape BioGateway App Explained in Five Use Cases [0.03%]
使用Cytoscape BioGateway应用程序通过五个用例解释网络构建
Rafael Riudavets Puig,Stian Holmås,Vladimir Mironov et al.
Rafael Riudavets Puig et al.
The BioGateway App is a plugin for the Cytoscape network editor, allowing users to interactively build biological networks by querying the Biogateway Resource Description Framework (RDF) triple store. BioGateway contains information from se...
Expanding the Perseus Software for Omics Data Analysis With Custom Plugins [0.03%]
通过自定义插件扩展Perseus软件以进行组学数据分析
Sung-Huan Yu,Daniela Ferretti,Julia P Schessner et al.
Sung-Huan Yu et al.
The Perseus software provides a comprehensive framework for the statistical analysis of large-scale quantitative proteomics data, also in combination with other omics dimensions. Rapid developments in proteomics technology and the ever-grow...
Blake A Sweeney,Arina A Tagmazian,Carlos E Ribas et al.
Blake A Sweeney et al.
Non-coding RNAs are essential for all life and carry out a wide range of functions. Information about these molecules is distributed across dozens of specialized resources. RNAcentral is a database of non-coding RNA sequences that provides ...
How to Illuminate the Dark Proteome Using the Multi-omic OpenProt Resource [0.03%]
如何利用多组学OpenProt资源照亮暗 proteome
Marie A Brunet,Amina M Lekehal,Xavier Roucou
Marie A Brunet
Ten of thousands of open reading frames (ORFs) are hidden within genomes. These alternative ORFs, or small ORFs, have eluded annotations because they are either small or within unsuspected locations. They are found in untranslated regions o...
Andrey Prjibelski,Dmitry Antipov,Dmitry Meleshko et al.
Andrey Prjibelski et al.
SPAdes-St. Petersburg genome Assembler-was originally developed for de novo assembly of genome sequencing data produced for cultivated microbial isolates and for single-cell genomic DNA sequencing. With time, the functionality of SPAdes was...
iSwathX 2.0 for Processing DDA Spectral Libraries for DIA Data Analysis [0.03%]
iSwathX 2.0用于DDA光谱库的处理以进行DIA数据分析
Zainab Noor,Abidali Mohamedali,Shoba Ranganathan
Zainab Noor
The iSwathX web application processes and normalizes mass spectrometry-based proteomics spectral libraries generated in the data-dependent acquisition (DDA) approach. These libraries are stored in various proteomics repositories such as Pep...
QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data [0.03%]
QIIME 2支持对多种微生物组数据进行端到端的综合分析以及与公共可用数据进行比较研究
Mehrbod Estaki,Lingjing Jiang,Nicholas A Bokulich et al.
Mehrbod Estaki et al.
QIIME 2 is a completely re-engineered microbiome bioinformatics platform based on the popular QIIME platform, which it has replaced. QIIME 2 facilitates comprehensive and fully reproducible microbiome data science, improving accessibility t...
Comparative Study
Current protocols in bioinformatics. 2020 Jun;70(1):e100. DOI:10.1002/cpbi.100 2020
Gábor Erdős,Zsuzsanna Dosztányi
Gábor Erdős
IUPred2A is a combined prediction tool designed to discover intrinsically disordered or conditionally disordered proteins and protein regions. Intrinsically disordered regions exist without a well-defined three-dimensional structure in isol...