Characterization of thermally sensitive miRNAs reveals a central role of the FoxO signaling pathway in regulating the cellular stress response of an extreme stenotherm, Trematomus bernacchii [0.03%]
热敏感miRNA的特征分析揭示了FoxO信号通路在极端stenotherm颤痕鱼低温胁迫响应中的核心作用
Dipali J Vasadia,Mackenzie L Zippay,Sean P Place
Dipali J Vasadia
Despite the lack of an inducible heat shock response (HSR), the Antarctic notothenioid fish, Trematomus bernacchii, has retained a level of physiological plasticity that can at least partially compensate for the effects of acute heat stress...
Genomic differences within the phylum Marinimicrobia: From waters to sediments in the Mariana Trench [0.03%]
马里亚纳海沟水体至沉积物中的Marinimicrobiia纲细菌基因组差异性分析
Jiao-Mei Huang,Yong Wang
Jiao-Mei Huang
Marinimicrobia are widespread from the marine surface to the hadal zone. Major clades of Marinimicrobia have evolved to different ecotypes along with energy gradients, but their genomes in deeper waters and sediments have rarely been studie...
Comparative genomic analysis of three lytic Lactococcus garvieae phages, novel phages with genome architecture linking the 936 phage species of Lactococcus lactis [0.03%]
三种裂解型Lactococcus garvieae噬菌体的比较基因组分析：具有与乳酸链球菌936噬菌体物种的基因组结构相联系的新噬菌体
Truong Dinh Hoai,Issei Nishiki,Atushi Fujiwara et al.
Truong Dinh Hoai et al.
To date, a number of bacteriophages that infect Lactococcus garvieae isolated from marine fish have been identified. However, the evolutionary insight between L. garvieae phages and other viral community have not yet been immersedly investi...
Transcriptional profiles of early stage red sea urchins (Mesocentrotus franciscanus) reveal differential regulation of gene expression across development [0.03%]
转录组分析早期阶段绿海 Urchin (Mesocentrotus franciscanus) 发育过程中基因表达的差异调控
Juliet M Wong,Juan D Gaitán-Espitia,Gretchen E Hofmann
Juliet M Wong
The red sea urchin, Mesocentrotus franciscanus, is an ecologically important kelp forest species that also serves as a valuable fisheries resource. In this study, we have assembled and annotated a developmental transcriptome for M. francisc...
Complete genome sequences of pooled genomic DNA from 10 marine bacteria using PacBio long-read sequencing [0.03%]
使用太平洋生物科学长读测序技术对混合基因组DNA的10株海洋细菌进行全基因组测序
Weizhi Song,Torsten Thomas,Richard J Edwards
Weizhi Song
Background: High-quality, completed genomes are important to understand the functions of marine bacteria. PacBio sequencing technology provides a powerful way to obtain high-quality completed genomes. However individual l...
De novo transcriptome assembly of the digitate morphotype of Briareum asbestinum (Octocorallia: Alcyonacea) from the southwest shelf of Puerto Rico [0.03%]
波多黎各西南大陆架Briareum asbestinum(八放珊瑚目：软珊瑚科)指状体型的新转录组组装
Liajay Rivera-García,Ramón E Rivera-Vicéns,Alex J Veglia et al.
Liajay Rivera-García et al.
Octocorals have now become the most visually dominant metazoan benthic taxa of most Caribbean reefs, following the precipitous decline of scleractinian corals. Yet taxonomic issues because of their extensive phenotypic plasticity are still ...
De Novo assembly and characterisation of the greentail prawn (Metapenaeus bennettae) hepatopancreas transcriptome - identification of stress response and detoxification transcripts [0.03%]
虾肝胰腺转录组的从头组装与特征分析-压力反应和解毒转录本的鉴定
Emily K Armstrong,Adam D Miller,Julie A Mondon et al.
Emily K Armstrong et al.
Crude oil is a key contaminant in aquatic environments entering via natural and anthropogenic sources, causing toxicity in marine organisms. Traditionally, biomarkers have been utilised to determine crude oil exposure and effects in aquatic...
Metagenomic assessment of body surface bacterial communities of the sea urchin, Tripneustes gratilla [0.03%]
瓦巴海胆（Tripneustes gratilla）表皮细菌群落的元基因组分析
M Brink,C Rhode,B M Macey et al.
M Brink et al.
Sea urchins, including Tripneustes gratilla, are susceptible to a disease known as bald sea urchin disease, which has the potential to lead to economic losses in this emerging aquaculture industry in South Africa. This disease is characteri...
Comparative genomic analyses reveal trehalose synthase genes as the signature in genus Methanoculleus [0.03%]
比较基因组分析揭示了甲烷生成相关糖基合成酶作为Methanoculleus属的标志基因
Sheng-Chung Chen,Chieh-Yin Weng,Mei-Chin Lai et al.
Sheng-Chung Chen et al.
To date, the only methanoarchaea isolated directly from methane hydrate bearing sediments were Methanoculleus submarinus Nankai-1T and Methanoculleus sp. MH98A. Here, we provide the genome of Methanoculleus taiwanensis CYW4T isolated from t...
Comparative Study
Marine genomics. 2019 Oct:47:100673. DOI:10.1016/j.margen.2019.03.008 2019
Two reads to rule them all: Nanopore long read-guided assembly of the iconic Christmas Island red crab, Gecarcoidea natalis (Pocock, 1888), mitochondrial genome and the challenges of AT-rich mitogenomes [0.03%]
纳米孔长读段指导的圣诞岛红螃蟹(Gecarcoidea natalis)线粒体基因组的组装及AT丰富型线粒体基因组面临的挑战
Han Ming Gan,Stuart M Linton,Christopher M Austin
Han Ming Gan
Despite recent advances in sequencing technology, a complete mitogenome assembly is still unavailable for the gecarcinid land crabs that include the iconic Christmas Island red crab (Gecarcoidea natalis) which is known for its high populati...